Log of /trunk/R

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Revision 698 - Directory Listing
Modified Tue Nov 17 21:29:09 2009 UTC (5 days, 15 hours ago) by dupontct

Set value of intern=FALSE in system() in sas.get function

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Revision 697 - Directory Listing
Modified Sun Oct 11 14:05:28 2009 UTC (6 weeks ago) by harrelfe

added averaging of selected fit object components over the multiple imputations

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Revision 694 - Directory Listing
Modified Fri Sep 11 22:07:42 2009 UTC (2 months, 1 week ago) by harrelfe

added new type='Sinput' to latex.function, and new arguments

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Revision 693 - Directory Listing
Modified Thu Sep 3 14:06:14 2009 UTC (2 months, 2 weeks ago) by harrelfe

fixed problem with makeSteps to not let it remove duplicates on y; used in survplot.rms in rms; included temporary version of makeSteps inside survplot.rms until Hmisc updated next time

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Revision 687 - Directory Listing
Modified Tue Sep 1 20:39:10 2009 UTC (2 months, 3 weeks ago) by dupontct

Fixes related to allowing the Hmisc package to pass R check.  Needed to rename function survfit.km to survfitKM to deconflict the survfit.km function from the survfit methods.

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Revision 686 - Directory Listing
Modified Mon Aug 31 13:50:17 2009 UTC (2 months, 3 weeks ago) by harrelfe

passed type to plot, lty to segments, removed ... from segments calls

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Revision 684 - Directory Listing
Modified Sun Aug 30 15:52:24 2009 UTC (2 months, 3 weeks ago) by harrelfe

fixed various errors identified by R CMD check Hmisc

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Revision 682 - Directory Listing
Modified Sat Aug 29 20:07:22 2009 UTC (2 months, 3 weeks ago) by harrelfe

fixed grid polygon, neatened code

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Revision 681 - Directory Listing
Modified Thu Aug 27 21:57:34 2009 UTC (2 months, 3 weeks ago) by dupontct

errbar.s as directed removed changes that allow for; specification of custom xlim ranges for factors, ablitity to turn off printing of axes for factors, specifcation of custom axis colors, specification of custom axis fonts, and specification of custom axis fonts

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Revision 679 - Directory Listing
Modified Thu Aug 27 20:34:43 2009 UTC (2 months, 3 weeks ago) by harrelfe

added type argument to keep from passing type to functions other than points which made a warning in R

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Revision 678 - Directory Listing
Modified Mon Aug 24 02:57:18 2009 UTC (3 months ago) by harrelfe

change Varcov to vcov, got rid of Varcov functions that already had vcov methods

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Revision 675 - Directory Listing
Modified Sun Aug 23 14:19:09 2009 UTC (3 months ago) by harrelfe

copied from Design to Hmisc and listed in Hmisc Misc.Rd; strgraphwrap is not Design-specific

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Revision 674 - Directory Listing
Modified Fri Aug 21 13:37:18 2009 UTC (3 months ago) by harrelfe

new function makeSteps

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Revision 672 - Directory Listing
Modified Sun Aug 16 17:15:40 2009 UTC (3 months, 1 week ago) by harrelfe

allowed fun to be a function

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Revision 670 - Directory Listing
Modified Wed Aug 12 11:56:01 2009 UTC (3 months, 1 week ago) by harrelfe

for xYplot method='filled bands', changed use of polygon or grid.polygon to not draw a border around the polygon

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Revision 666 - Directory Listing
Modified Tue Jul 21 13:40:54 2009 UTC (4 months ago) by dupontct

fixed issue with non-return of output.  changed sys() calls to base package system() calls

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Revision 664 - Directory Listing
Modified Sat Jun 27 21:20:31 2009 UTC (4 months, 3 weeks ago) by harrelfe

made pr=FALSE suppress convergence progress printing

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Revision 662 - Directory Listing
Modified Sat Jun 13 14:28:45 2009 UTC (5 months, 1 week ago) by harrelfe

added prselect function to make it easy to selectively include analysis output in Sweave documents

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Revision 661 - Directory Listing
Modified Sat Jun 13 13:06:04 2009 UTC (5 months, 1 week ago) by harrelfe

fixed bug in summarize in which a by variable level of "" resulted in a level being lost and all results shifted one level

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Revision 654 - Directory Listing
Modified Thu May 7 19:18:35 2009 UTC (6 months, 2 weeks ago) by harrelfe

added check that survival distribution defined out late enough

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Revision 653 - Directory Listing
Modified Thu May 7 15:45:39 2009 UTC (6 months, 2 weeks ago) by harrelfe

improved output for print.spower

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Revision 648 - Directory Listing
Modified Tue May 5 23:29:46 2009 UTC (6 months, 2 weeks ago) by harrelfe

added cox option to spower to save log hazard ratios; added print method to print various summaries of hazard ratios

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Revision 646 - Directory Listing
Modified Tue Apr 28 16:04:20 2009 UTC (6 months, 3 weeks ago) by dupontct

fixed problem with rm.boot in R 2.10

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Revision 645 - Directory Listing
Modified Mon Apr 27 21:38:31 2009 UTC (6 months, 3 weeks ago) by harrelfe

improved simulation monitor output

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Revision 642 - Directory Listing
Modified Mon Apr 27 16:53:10 2009 UTC (6 months, 3 weeks ago) by dupontct

fixed R documentation for submission to cran

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Revision 639 - Directory Listing
Modified Tue Apr 21 16:18:01 2009 UTC (7 months ago) by dupontct

added ablity to specfiy the point character for ploting with factors.

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Revision 638 - Directory Listing
Modified Thu Apr 16 13:47:46 2009 UTC (7 months, 1 week ago) by dupontct

Moved survfit.km function from Misc.s file to survfit.km.s for easier finding.

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Revision 634 - Directory Listing
Modified Sun Apr 5 18:41:00 2009 UTC (7 months, 2 weeks ago) by harrelfe

fixed rcorrcens to handle factor predictors

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Revision 633 - Directory Listing
Modified Sun Apr 5 18:07:27 2009 UTC (7 months, 2 weeks ago) by harrelfe

added rcorrcens generic and rcorrcens.formula functions

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Revision 631 - Directory Listing
Modified Sun Apr 5 16:30:45 2009 UTC (7 months, 2 weeks ago) by harrelfe

generalized is.imputed to allow argument to be a matrix (i.e., a Surv object)

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Revision 630 - Directory Listing
Modified Mon Mar 30 02:30:12 2009 UTC (7 months, 3 weeks ago) by harrelfe

Defined survfit.km, sensed version of survival package to get the 
proper function from the namespace (survfitKM is the newer name)

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Revision 629 - Directory Listing
Modified Mon Mar 30 02:29:14 2009 UTC (7 months, 3 weeks ago) by harrelfe

changed to use new survfit.km function defined in Misc.s; improved 
iteration number output

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Revision 628 - Directory Listing
Modified Fri Mar 27 19:28:59 2009 UTC (7 months, 3 weeks ago) by dupontct

fixed escaping issue with some latex strings in summary.formula.s.  fix latex code bug in latex.default.

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Revision 627 - Directory Listing
Modified Fri Mar 20 15:53:45 2009 UTC (8 months ago) by harrelfe

added offset and ... arguments to plotCorrPrecision for more flexible use of labcurve

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Revision 625 - Directory Listing
Modified Tue Mar 17 14:51:35 2009 UTC (8 months, 1 week ago) by harrelfe

Fixed bug that if group is present, NAs in a variable do not result in 
the index vector s having NAs after the group bootstrap sample is taken

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Revision 624 - Directory Listing
Modified Tue Mar 17 14:48:54 2009 UTC (8 months, 1 week ago) by harrelfe

fixed max(x) to take NAs into account

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Revision 623 - Directory Listing
Modified Sun Mar 8 19:37:13 2009 UTC (8 months, 2 weeks ago) by harrelfe

made method='cross' return a vector instead of a 1-column matrix if only 
one statistic is computed

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Revision 621 - Directory Listing
Modified Sun Mar 1 20:51:08 2009 UTC (8 months, 3 weeks ago) by harrelfe

added checks for unused levels of categorical variables (generates an 
error) and for levels with < 5 observations (generates a warning)

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Revision 617 - Directory Listing
Modified Mon Feb 2 15:35:45 2009 UTC (9 months, 2 weeks ago) by dupontct

Fixed latex.default bug associated with blank colhead element not being added when object has rownames

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Revision 613 - Directory Listing
Modified Thu Jan 22 22:43:48 2009 UTC (10 months ago) by dupontct

Modification to allow Hmisc to pass Rcheck.  Modified largref.f so that it no longer uses a DO loop illegaly.

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Revision 611 - Directory Listing
Modified Wed Jan 21 17:00:15 2009 UTC (10 months ago) by harrelfe

added new argument dtrans for fit.mult.impute to allow for after-imputation transformation of a filled-in data frame

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Revision 609 - Directory Listing
Modified Fri Dec 26 21:10:09 2008 UTC (10 months, 3 weeks ago) by dupontct

moved capitalize function from Design to Hmisc, changed date, added new functions nstr, and discrete

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Revision 608 - Directory Listing
Modified Fri Dec 26 20:20:35 2008 UTC (10 months, 3 weeks ago) by dupontct

created all corrections needed to create Hmisc 3.5-0

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Revision 605 - Directory Listing
Modified Wed Dec 17 17:31:15 2008 UTC (11 months ago) by harrelfe

new function improveProb

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Revision 603 - Directory Listing
Modified Mon Dec 15 17:01:05 2008 UTC (11 months, 1 week ago) by dupontct

fixed bug in sas.get related to output arg in status of sas code run

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Revision 599 - Directory Listing
Modified Sat Dec 6 23:28:35 2008 UTC (11 months, 2 weeks ago) by harrelfe

Reversed logic for method='read.xport' with regard to as.is to recognize 
that read.xport converts all SAS character variables to factors.

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Revision 595 - Directory Listing
Modified Fri Oct 17 15:55:12 2008 UTC (13 months ago) by harrelfe

had forgotten to pass key.opts for R grid in putKey

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Revision 593 - Directory Listing
Modified Mon Sep 8 15:41:07 2008 UTC (14 months, 2 weeks ago) by dupontct

fixed problem with format.dates function not being available for use in formatDateTime function.

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Revision 592 - Directory Listing
Modified Fri Aug 29 21:02:59 2008 UTC (14 months, 3 weeks ago) by dupontct

renamed function stata.get2 back to stata.get.

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Revision 591 - Directory Listing
Modified Wed Aug 20 13:53:23 2008 UTC (15 months ago) by dupontct

Fixed bug with extra column that are added when using the cgroup functionality was not being added to the column headings row

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Revision 590 - Directory Listing
Modified Tue Aug 19 16:27:46 2008 UTC (15 months ago) by dupontct

Added subplot and cnvrt.coords functions from Greg Snow to the Hmisc package

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Revision 588 - Directory Listing
Modified Sun Aug 10 14:50:37 2008 UTC (15 months, 1 week ago) by harrelfe

added f argument to pass to lowess

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Revision 587 - Directory Listing
Modified Fri Jul 25 12:26:08 2008 UTC (15 months, 4 weeks ago) by harrelfe

carried forward eps and pdig arguments for latex.summary.formula.reverse

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Revision 583 - Directory Listing
Modified Mon Feb 25 21:00:32 2008 UTC (20 months, 4 weeks ago) by dupontct

fixed typo in latex.default bugfix for using cellTexCmds and c.group arguments together

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Revision 582 - Directory Listing
Modified Mon Feb 25 16:15:57 2008 UTC (20 months, 4 weeks ago) by dupontct

fixed bug in latex.default involving error when trying to use cgroup and cellTexCmds arguments together

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Revision 580 - Directory Listing
Modified Tue Jan 22 13:56:43 2008 UTC (22 months ago) by harrelfe

passed lwd to segments if x is factor or character

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Revision 577 - Directory Listing
Modified Sat Jan 12 14:51:45 2008 UTC (22 months, 1 week ago) by harrelfe

for var.inner changed all.vars call to use max.names=1e6; the default of 200 variables caused Design to not be able to handle models with more than 200 predictors

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Revision 575 - Directory Listing
Modified Sun Jan 6 15:56:51 2008 UTC (22 months, 2 weeks ago) by harrelfe

neatened code, added pc option to convert basis functions to orthogonal principal components

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Revision 574 - Directory Listing
Modified Wed Jan 2 21:25:25 2008 UTC (22 months, 3 weeks ago) by harrelfe

added pc argument

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Revision 571 - Directory Listing
Modified Wed Jan 2 20:43:55 2008 UTC (22 months, 3 weeks ago) by harrelfe

added iterms argument

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Revision 569 - Directory Listing
Modified Tue Jan 1 22:27:58 2008 UTC (22 months, 3 weeks ago) by harrelfe

rcspline.restate was putting out invalid LaTeX code; changed to use latexSN to convert to scientific notation

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Revision 568 - Directory Listing
Modified Mon Dec 31 16:18:15 2007 UTC (22 months, 3 weeks ago) by harrelfe

drop unused levels for group variable in Ecdf.default; neatened code

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Revision 567 - Directory Listing
Modified Mon Dec 31 03:39:52 2007 UTC (22 months, 3 weeks ago) by harrelfe

fixed typo in print method

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Revision 566 - Directory Listing
Modified Sun Dec 30 20:50:44 2007 UTC (22 months, 3 weeks ago) by harrelfe

changed default mar and lgp for R

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Revision 565 - Directory Listing
Modified Tue Dec 18 16:50:43 2007 UTC (23 months ago) by harrelfe

removed single quote that got into file at the end of the function definition

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Revision 564 - Directory Listing
Modified Tue Nov 27 22:01:51 2007 UTC (23 months, 3 weeks ago) by harrelfe

fixed bug; thanks: mark_difford@yahoo.co.uk

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Revision 561 - Directory Listing
Modified Wed Oct 24 21:21:45 2007 UTC (2 years, 1 month ago) by harrelfe

added ~ to vector of characters to translate in latexTranslate

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Revision 559 - Directory Listing
Modified Sat Oct 20 16:56:23 2007 UTC (2 years, 1 month ago) by harrelfe

improved labelPlotmath to recognize NA units as same as blank

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Revision 558 - Directory Listing
Modified Sat Oct 20 16:55:58 2007 UTC (2 years, 1 month ago) by harrelfe

new function lrcum

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Revision 557 - Directory Listing
Modified Wed Oct 3 17:02:25 2007 UTC (2 years, 1 month ago) by harrelfe

fixed bug in df element of list returned by aregImpute

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Revision 556 - Directory Listing
Modified Fri Sep 21 15:00:40 2007 UTC (2 years, 2 months ago) by dupontct

Reworked stata.get to remove the for loop and fixed a bug in the way that label.table was assigned to a variable.

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Revision 555 - Directory Listing
Modified Tue Sep 18 23:07:42 2007 UTC (2 years, 2 months ago) by harrelfe

added checks for too few values on bootstrap resamples for character or factor variables

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Revision 554 - Directory Listing
Modified Tue Sep 18 23:07:20 2007 UTC (2 years, 2 months ago) by harrelfe

improved code formatting; added checks for too few unique values on bootstrap resamples

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Revision 553 - Directory Listing
Modified Tue Sep 18 18:37:57 2007 UTC (2 years, 2 months ago) by harrelfe

fixed but in print or html contents when no attributes present and sort= specified

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Revision 552 - Directory Listing
Modified Tue Sep 18 15:05:22 2007 UTC (2 years, 2 months ago) by harrelfe

sub quit accepting \\(.*\\); changed to (.*) in getLatestSource

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Revision 550 - Directory Listing
Modified Mon Sep 17 19:01:20 2007 UTC (2 years, 2 months ago) by harrelfe

added new option to print.contents.data.frame and html.contents.data.frame, set number=TRUE to number the variables by order in the data frame

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Revision 549 - Directory Listing
Modified Mon Sep 17 16:26:00 2007 UTC (2 years, 2 months ago) by harrelfe

improved print.describe to use options(width) to specify how many dashes are printed to separate variables

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Revision 544 - Directory Listing
Modified Tue Aug 21 19:50:08 2007 UTC (2 years, 3 months ago) by harrelfe

By Joel Dubin: in the newest section of the program) to allow for more general specification of the point.cex.mult.var argument

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Revision 543 - Directory Listing
Modified Mon Aug 20 22:09:04 2007 UTC (2 years, 3 months ago) by harrelfe

put c( ) in return(Mean=,, Lower=, Upper=) in two places

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Revision 542 - Directory Listing
Modified Tue Aug 14 22:24:40 2007 UTC (2 years, 3 months ago) by harrelfe

changed align and halign args in latexTabular and added helvetica argument

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Revision 540 - Directory Listing
Modified Tue Aug 14 19:44:24 2007 UTC (2 years, 3 months ago) by harrelfe

improved efficiency of random multinomials

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Revision 538 - Directory Listing
Modified Mon Aug 13 18:37:20 2007 UTC (2 years, 3 months ago) by harrelfe

Joel Dubin added three new arguments: point.cex.mult, extra.points.no.var, point.cex.mult.var

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Revision 537 - Directory Listing
Modified Mon Aug 13 18:36:06 2007 UTC (2 years, 3 months ago) by harrelfe

added latexTabular function for simple tabular environment; output is not a file but is a character vector

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Revision 533 - Directory Listing
Modified Wed Aug 1 23:21:07 2007 UTC (2 years, 3 months ago) by harrelfe

forced xpd=FALSE for drawing lines with pl=TRUE to keep curves from going outside axis range; neatened code, removing unnecessary newlines in the middle of commands

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Revision 532 - Directory Listing
Modified Mon Jul 30 23:06:20 2007 UTC (2 years, 3 months ago) by harrelfe

fixed bug in matrix2dataFrame in which a matrix column that used to be a factor could not be converted back to a factor unless that column has storage mode set to integer first

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Revision 531 - Directory Listing
Modified Fri Jul 27 21:35:56 2007 UTC (2 years, 3 months ago) by harrelfe

added new argument vnames to plot method to allow plotting of variable labels in place of names

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Revision 529 - Directory Listing
Modified Wed Jul 18 16:26:48 2007 UTC (2 years, 4 months ago) by dupontct

Merged release_3.4 changes r517:527 into the trunk.

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Revision 526 - Directory Listing
Modified Fri Jul 13 20:17:19 2007 UTC (2 years, 4 months ago) by harrelfe

fix bad bug when weights was specified

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Revision 524 - Directory Listing
Modified Thu Jul 12 21:42:06 2007 UTC (2 years, 4 months ago) by harrelfe

extended Lag to allow for negative shifts

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Revision 523 - Directory Listing
Modified Thu Jul 12 18:29:26 2007 UTC (2 years, 4 months ago) by harrelfe

improved code format, changed a few if(is.null(object)) to if(!length(object))

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Revision 522 - Directory Listing
Modified Thu Jul 12 18:28:00 2007 UTC (2 years, 4 months ago) by harrelfe

improved formatting of code

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Revision 521 - Directory Listing
Modified Wed Jul 11 19:20:34 2007 UTC (2 years, 4 months ago) by harrelfe

for testing categorical variables in summary.formula method='reverse' removed rows that have all zero frequencies before running the test; test was returning null

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Revision 519 - Directory Listing
Modified Wed Jul 11 14:34:23 2007 UTC (2 years, 4 months ago) by dupontct

Added (correctly this time) .Rhistory and .so files to subversion ignore list

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Revision 518 - Directory Listing
Modified Wed Jul 11 14:32:44 2007 UTC (2 years, 4 months ago) by dupontct

Added .Rhistory and .so files to subversion ignore list

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Revision 517 - Directory Listing
Modified Wed Jul 11 14:09:26 2007 UTC (2 years, 4 months ago) by dupontct

Merged release_3.4 changes r497:516 into the trunk.

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Revision 515 - Directory Listing
Modified Wed Jul 11 13:50:09 2007 UTC (2 years, 4 months ago) by dupontct

Closes #16.  Minor fix to {{{errbar}}}.  
Had to adjust for the fact that the width of
the segments are {{{x * 10 ^ -smidge}}} to {{{x * 10 ^ smidge}}} not 
{{{x - smidge}}} to {{{x + smidge}}}

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Revision 514 - Directory Listing
Modified Fri Jul 6 21:28:09 2007 UTC (2 years, 4 months ago) by harrelfe

fixed bug having to do with counting blank lines; cleaned up and improved formatting of code;  captured output of sys() directly instead of piping stdout

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Revision 512 - Directory Listing
Modified Fri Jul 6 17:42:37 2007 UTC (2 years, 4 months ago) by harrelfe

extended formatArgs argument to latex.summary.formula.reverse and added round argument to [latex,print].summary.formula.reverse to have control over how 3-number summaries and mean and SD are typeset

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Revision 503 - Directory Listing
Modified Fri May 18 23:29:43 2007 UTC (2 years, 6 months ago) by harrelfe

improved logrank to check for NAs and to not force group to be 1 and 2; tried to get stratification to work but failed

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Revision 502 - Directory Listing
Modified Thu May 10 17:54:47 2007 UTC (2 years, 6 months ago) by harrelfe

New set of misc. epidemiology functions.  For now, stratified Mantel-Haenszel risk ratio with Greenland-Robins variance estimator

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Revision 500 - Directory Listing
Modified Wed May 9 15:35:49 2007 UTC (2 years, 6 months ago) by harrelfe

improved rowsumFast to just use builtin R rowsum function (much faster) and changed default for reorder.  Not changed for S-Plus.

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Revision 495 - Directory Listing
Modified Wed May 2 19:31:06 2007 UTC (2 years, 6 months ago) by dupontct

Merged release_3.3 changes r491:494 into the trunk.

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Revision 492 - Directory Listing
Modified Thu Apr 26 20:55:20 2007 UTC (2 years, 6 months ago) by harrelfe

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Revision 491 - Directory Listing
Modified Thu Apr 26 20:48:21 2007 UTC (2 years, 6 months ago) by dupontct

Merged release_3.3 changes r472:490 into the trunk.

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Revision 488 - Directory Listing
Modified Tue Apr 24 20:39:45 2007 UTC (2 years, 7 months ago) by harrelfe

changed mChoice variables to factors up front if data given (don't know how to handle this when data is not given) to make model.frame work

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Revision 487 - Directory Listing
Modified Tue Apr 24 20:39:05 2007 UTC (2 years, 7 months ago) by harrelfe

added is.mChoice function

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Revision 486 - Directory Listing
Modified Tue Apr 24 18:51:28 2007 UTC (2 years, 7 months ago) by harrelfe

fixed new code that excludes variables with poor distributions

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Revision 484 - Directory Listing
Modified Tue Apr 17 16:02:05 2007 UTC (2 years, 7 months ago) by harrelfe

added minfreq argument

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Revision 483 - Directory Listing
Modified Fri Apr 13 21:14:36 2007 UTC (2 years, 7 months ago) by harrelfe

fixed data default value=NULL to allow for absence of data=

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Revision 481 - Directory Listing
Modified Thu Apr 12 23:01:06 2007 UTC (2 years, 7 months ago) by harrelfe

updated model.frame approach

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Revision 479 - Directory Listing
Modified Wed Apr 11 22:23:05 2007 UTC (2 years, 7 months ago) by harrelfe

new function for formal redundancy analysis

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Revision 478 - Directory Listing
Modified Wed Apr 11 22:22:31 2007 UTC (2 years, 7 months ago) by harrelfe

changed to use dataframeReduce function, cleaned up code formatting, used explicit model.frame call so could modified data first

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Revision 477 - Directory Listing
Modified Wed Apr 11 22:21:23 2007 UTC (2 years, 7 months ago) by harrelfe

added dataframeReduce function

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Revision 473 - Directory Listing
Modified Fri Apr 6 20:10:32 2007 UTC (2 years, 7 months ago) by harrelfe

enhanced csv.get to allow for a row containing variable labels, and to allow variable names to be in a row other than row one

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Revision 472 - Directory Listing
Modified Tue Apr 3 14:56:56 2007 UTC (2 years, 7 months ago) by dupontct

Merge of changes made to 3.3-1 release.

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Revision 467 - Directory Listing
Modified Tue Mar 27 23:01:43 2007 UTC (2 years, 7 months ago) by harrelfe

ran caption through latexTranslate for latex.summary.formula.response, to handle underscores in response variable names

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Revision 466 - Directory Listing
Modified Tue Mar 27 16:21:43 2007 UTC (2 years, 7 months ago) by harrelfe

in label made a "" label use the default argument if it had nonzero length; formatted some code

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Revision 465 - Directory Listing
Modified Thu Mar 22 21:15:31 2007 UTC (2 years, 8 months ago) by harrelfe

changed dQuote to shQuote

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Revision 463 - Directory Listing
Modified Mon Mar 19 21:41:28 2007 UTC (2 years, 8 months ago) by harrelfe

changed default width.factor in dotchart2 to 1.1

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Revision 462 - Directory Listing
Modified Mon Mar 19 21:08:46 2007 UTC (2 years, 8 months ago) by harrelfe

improved formatting source code dotchart2; changed dotchart2 to prepend " " in front of auxdata and auxtitle - was getting auxiliary data to right of graph running into right box line

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Revision 461 - Directory Listing
Modified Mon Mar 19 20:20:15 2007 UTC (2 years, 8 months ago) by harrelfe

fixed summary.formula to treat labels of "" the same as no label by adding internal function getlab

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Revision 459 - Directory Listing
Modified Fri Mar 9 22:44:31 2007 UTC (2 years, 8 months ago) by harrelfe

changed mind on default dateformat

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Revision 455 - Directory Listing
Modified Fri Mar 9 22:35:32 2007 UTC (2 years, 8 months ago) by harrelfe

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Revision 454 - Directory Listing
Modified Fri Mar 9 22:34:58 2007 UTC (2 years, 8 months ago) by harrelfe

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Revision 453 - Directory Listing
Modified Fri Mar 9 22:33:41 2007 UTC (2 years, 8 months ago) by harrelfe

enhanced cleanup.import and csv.get to handle date-time variables as need with mdb.get

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Revision 452 - Directory Listing
Modified Fri Mar 9 22:32:58 2007 UTC (2 years, 8 months ago) by harrelfe

New function to import a Microsoft Access database

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Revision 450 - Directory Listing
Modified Tue Mar 6 16:39:00 2007 UTC (2 years, 8 months ago) by dupontct

enters complete version of floor.chron

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Revision 446 - Directory Listing
Modified Tue Feb 27 23:25:04 2007 UTC (2 years, 8 months ago) by harrelfe

... was not passed to enough graphics functions; add=TRUE did not result in points being plotted; fixed

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Revision 445 - Directory Listing
Modified Tue Feb 27 22:00:51 2007 UTC (2 years, 8 months ago) by scottt

Had syntax error in .checkRoundChron: changed 'return given' to 'return(given)'.

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Revision 443 - Directory Listing
Modified Mon Feb 26 20:37:37 2007 UTC (2 years, 8 months ago) by harrelfe

fixed bug in unmatched brace for latex.describe, added back vbox for individual output when not verbose

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Revision 440 - Directory Listing
Modified Wed Feb 14 16:41:37 2007 UTC (2 years, 9 months ago) by dupontct

   * 'R/dates.s'  reworked floor.cron and ceiling.cron for a better implementation.
   * 'R/inc-dec.s' created 2 new functions 'inc<-' and 'dec<-'.  'inc<-' increments
'x' by value assigned to it.  'dec<-' does the same thing but
decrements 'x'.
   * 'R/responseSummary.s' changed 'responseSummary' 'FUN' argument so that is it run on
each row of the response instead of the entriorty of the response.
   * 'R/latexObject.s' changed names of constant escapes.
   * 'R/combine.s' functions to perform element wise combination.
   * 'R/print.char.list.s'  various code simplifications.
   * 'R/default.arg.s'  a function to extact the default value of a
function argument.
   * 'man/valueTags.Rd'  added a new line to end of file.
   

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Revision 439 - Directory Listing
Modified Wed Feb 14 15:15:39 2007 UTC (2 years, 9 months ago) by dupontct

Fixed behavior of requirePackage function to work correctly.  change all calls to requirePackage to be consistant.

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Revision 438 - Directory Listing
Modified Wed Feb 14 14:37:59 2007 UTC (2 years, 9 months ago) by scottt

Modified the ordTest argument once again.  Actually, need to specify 'character.only = TRUE' in 'requirePackage('Design', ...)' for it to work correctly.

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Revision 437 - Directory Listing
Modified Wed Feb 14 14:16:28 2007 UTC (2 years, 9 months ago) by scottt

Modified 'requirePackage('Design')' to 'requirePackage(Design)' under the ordTest argument --- the require() function which the requirePackage() function calls assumes you have submitted a name (i.e., without quotes) unless you specify 'character.only = TRUE'.

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Revision 436 - Directory Listing
Modified Mon Feb 12 22:05:10 2007 UTC (2 years, 9 months ago) by dupontct

Merged changes from branch release_3.2 back into trunk.

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Revision 433 - Directory Listing
Modified Fri Feb 9 23:28:35 2007 UTC (2 years, 9 months ago) by harrelfe

added boot.method argument to implement approximate Bayesian bootstrap when group is not used

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Revision 432 - Directory Listing
Modified Wed Feb 7 16:45:42 2007 UTC (2 years, 9 months ago) by scottt

Modified extracolheads such that when cgroup and n.cgroup are used in a latex.summary.formula.reverse statement the extra N= columns line up correctly.

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Revision 431 - Directory Listing
Modified Mon Feb 5 23:20:19 2007 UTC (2 years, 9 months ago) by harrelfe

For listunique ignored leading and trailing white space, multiple white spaces, and case when tabulating character strings.  Carriage returns without new lines are changed to a single space.

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Revision 428 - Directory Listing
Modified Fri Feb 2 23:24:34 2007 UTC (2 years, 9 months ago) by harrelfe

Finished addition of listunique and listnchar, handled listing of character values in latex.describe.*

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Revision 427 - Directory Listing
Modified Wed Jan 31 19:07:48 2007 UTC (2 years, 9 months ago) by harrelfe

handled underscore in dataset name in latex.describe by calling latexTranslate

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Revision 426 - Directory Listing
Modified Wed Jan 31 19:04:16 2007 UTC (2 years, 9 months ago) by harrelfe

fixed inmChoice by unclassing first argument when pasting

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Revision 425 - Directory Listing
Modified Wed Jan 31 18:40:16 2007 UTC (2 years, 9 months ago) by harrelfe

fixed bug in latex.describe to translate underscores in variable names when listing those with all NAs

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Revision 418 - Directory Listing
Modified Tue Jan 16 20:40:42 2007 UTC (2 years, 10 months ago) by harrelfe

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Revision 416 - Directory Listing
Modified Tue Jan 16 20:30:26 2007 UTC (2 years, 10 months ago) by harrelfe

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Revision 415 - Directory Listing
Modified Tue Jan 16 20:27:08 2007 UTC (2 years, 10 months ago) by harrelfe

fixed bug with curtail, added datadensity argument to plot.aregImpute

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Revision 413 - Directory Listing
Modified Tue Jan 16 17:15:40 2007 UTC (2 years, 10 months ago) by harrelfe

added curtail option (default: FALSE) for type='regression' to set imputed values to the boundaries of real data if outside

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Revision 411 - Directory Listing
Modified Mon Jan 15 23:24:04 2007 UTC (2 years, 10 months ago) by harrelfe

had forgotten to update defaults for nk, tlinear

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Revision 410 - Directory Listing
Modified Fri Jan 5 01:49:25 2007 UTC (2 years, 10 months ago) by harrelfe

enhanced html.data.frame to set column headings in h2

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Revision 409 - Directory Listing
Modified Fri Jan 5 01:48:59 2007 UTC (2 years, 10 months ago) by harrelfe

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Revision 407 - Directory Listing
Modified Fri Jan 5 01:02:25 2007 UTC (2 years, 10 months ago) by harrelfe

Factored out category levels that are identical (and in the same order) for multiple variables.  Changed print and html methods accordingly, and made new default for html output, levelType='list'.

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Revision 406 - Directory Listing
Modified Fri Jan 5 01:01:31 2007 UTC (2 years, 10 months ago) by harrelfe

fixed bug in pasteFit which was ignoring the sep argument

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Revision 401 - Directory Listing
Modified Tue Jan 2 16:52:19 2007 UTC (2 years, 10 months ago) by harrelfe

New function rcsplineFunction that creates a function to quickly compute a fitted restricted cubic spline function, without expressing it in prettiest (non-restricted) form.

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Revision 400 - Directory Listing
Modified Tue Jan 2 16:51:20 2007 UTC (2 years, 10 months ago) by harrelfe

added tlinear argument (this was not in areg as previously stated) and made default tlinear=TRUE nk=3.  Finished implementation of calculation of multiple inverses of non-monotonic y transformations when getting imputations on original scale with type='regression'.

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Revision 399 - Directory Listing
Modified Tue Jan 2 16:49:24 2007 UTC (2 years, 10 months ago) by harrelfe

used inverseFunction to get imputed values on the original y scale; added type='fitted' to the predict method; added new option tlinear which by default forces the target variable to be linearly transformed, and set default tlinear=TRUE and nk=3.  Finished checking implementation of bootstrap and cross-validation.

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Revision 398 - Directory Listing
Modified Tue Jan 2 16:47:17 2007 UTC (2 years, 10 months ago) by harrelfe

added new function inverseFunction to create a function that computes via linear interpolation within monotonic intervals a function that evaluates the inverse of a tabulated function

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Revision 397 - Directory Listing
Modified Thu Dec 28 20:47:25 2006 UTC (2 years, 10 months ago) by harrelfe

extend bootstrap and cross-validation capabilities

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Revision 396 - Directory Listing
Modified Thu Dec 28 20:46:58 2006 UTC (2 years, 10 months ago) by harrelfe

replaced bf with testbf in latex.describe

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Revision 392 - Directory Listing
Modified Thu Dec 21 00:06:44 2006 UTC (2 years, 11 months ago) by harrelfe

made default nk=0

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Revision 389 - Directory Listing
Modified Tue Dec 19 01:21:35 2006 UTC (2 years, 11 months ago) by harrelfe

fixed bug in type='regression' where predicted values were scaled to unit variance but residuals were not similarly scaled.  Also changed to use residuals calculated directly by areg

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Revision 388 - Directory Listing
Modified Tue Dec 19 00:47:48 2006 UTC (2 years, 11 months ago) by harrelfe

made sure return vectors for linear.predictors and residuals

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Revision 387 - Directory Listing
Modified Tue Dec 19 00:46:47 2006 UTC (2 years, 11 months ago) by harrelfe

made lm.fit.qr.bare return vectors for fitted.values and residuals, no matrices with one column

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Revision 386 - Directory Listing
Modified Mon Dec 18 23:35:32 2006 UTC (2 years, 11 months ago) by harrelfe

always computed linear.predictors, removed argument

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Revision 384 - Directory Listing
Modified Wed Dec 13 19:26:13 2006 UTC (2 years, 11 months ago) by harrelfe

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Revision 383 - Directory Listing
Modified Wed Dec 13 19:26:08 2006 UTC (2 years, 11 months ago) by harrelfe

improve html for multiple links

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Revision 382 - Directory Listing
Modified Wed Dec 13 19:25:47 2006 UTC (2 years, 11 months ago) by harrelfe

print single unique value of not numeric; improve contents.* for longlabels; use summary.mChoice in describe for mChoice variables

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Revision 374 - Directory Listing
Modified Mon Dec 11 16:23:31 2006 UTC (2 years, 11 months ago) by harrelfe

removed mChoice documentation and function aliases

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Revision 373 - Directory Listing
Modified Mon Dec 11 16:22:36 2006 UTC (2 years, 11 months ago) by harrelfe

new series of multiple choice functions (mChoice) consistent with Clinical Sultan data management system

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Revision 372 - Directory Listing
Modified Sat Dec 9 00:01:48 2006 UTC (2 years, 11 months ago) by harrelfe

remove mChoice functions; need to fix summary.formula to use new mChoice storage format

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Revision 370 - Directory Listing
Modified Thu Dec 7 18:50:09 2006 UTC (2 years, 11 months ago) by harrelfe

moved spearman2 and chiSquare functions out (now in biVar)

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Revision 369 - Directory Listing
Modified Thu Dec 7 18:48:22 2006 UTC (2 years, 11 months ago) by harrelfe

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Revision 365 - Directory Listing
Modified Mon Dec 4 23:09:33 2006 UTC (2 years, 11 months ago) by harrelfe

New function to factor out code in spearman2.formula and chiSquare and make it easier to add new bivariate summary functions

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Revision 362 - Directory Listing
Modified Wed Nov 29 16:49:25 2006 UTC (2 years, 11 months ago) by harrelfe

changed default groupfont in dotchart2 to 2

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Revision 361 - Directory Listing
Modified Mon Nov 27 15:27:38 2006 UTC (2 years, 11 months ago) by harrelfe

added chiSquare.* functions

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Revision 358 - Directory Listing
Modified Wed Nov 22 22:35:11 2006 UTC (3 years ago) by harrelfe

added chiSquare functions similar to Spearman2 but for a polytomous response variable

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Revision 356 - Directory Listing
Modified Mon Nov 20 03:16:33 2006 UTC (3 years ago) by harrelfe

changed getLatestSource to use Subversion by default but also to allow cvs as an option

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Revision 354 - Directory Listing
Modified Tue Oct 31 13:34:49 2006 UTC (3 years ago) by harrelfe

changed asNumericMatrix to store original attributes as 'origAttributes' in the global environment

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Revision 352 - Directory Listing
Modified Tue Oct 31 01:01:43 2006 UTC (3 years ago) by harrelfe

removed subsAttr function, put its functionality in asNumericMatrix, changed matrix2dataFrame, handled character variables

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Revision 350 - Directory Listing
Modified Sun Oct 29 14:39:00 2006 UTC (3 years ago) by harrelfe

changed iteration progress output to overwrite, to just show the current iteration number

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Revision 348 - Directory Listing
Modified Wed Oct 25 19:54:44 2006 UTC (3 years ago) by scottt

fixed bug in ordtest in summary.fomula and made format.pval better.

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Revision 347 - Directory Listing
Modified Tue Oct 24 18:39:56 2006 UTC (3 years, 1 month ago) by harrelfe

fixed bug with return.df=TRUE; as.data.frame would not convert row names that were all blank

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Revision 346 - Directory Listing
Modified Mon Oct 23 18:15:45 2006 UTC (3 years, 1 month ago) by dupontct

Version bump and fixed various typos in the files.

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Revision 344 - Directory Listing
Modified Fri Oct 20 22:32:24 2006 UTC (3 years, 1 month ago) by harrelfe

*** empty log message ***

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Revision 343 - Directory Listing
Modified Fri Oct 20 22:19:14 2006 UTC (3 years, 1 month ago) by harrelfe

added plotfreq argument to plot.curveRep

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Revision 341 - Directory Listing
Modified Thu Oct 19 14:31:18 2006 UTC (3 years, 1 month ago) by dupontct

fixed various typos in the R source files.
Changed man pages to acruaely reflect the code.

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Revision 340 - Directory Listing
Modified Tue Oct 17 18:57:22 2006 UTC (3 years, 1 month ago) by dupontct

   Got rid of spare '}' that snuckin through the cvs merge.

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Revision 339 - Directory Listing
Modified Tue Oct 17 18:45:46 2006 UTC (3 years, 1 month ago) by dupontct

   Fixed the n.rgroup problem.

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Revision 337 - Directory Listing
Modified Tue Oct 17 04:22:11 2006 UTC (3 years, 1 month ago) by harrelfe

added 2nd argument to Save function to allow name of object created to be specified as a character string

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Revision 335 - Directory Listing
Modified Mon Oct 16 15:53:00 2006 UTC (3 years, 1 month ago) by harrelfe

also added charfactor to csv.get

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Revision 334 - Directory Listing
Modified Mon Oct 16 15:49:59 2006 UTC (3 years, 1 month ago) by harrelfe

added charfactor argument to stata.get, cleanup.import, upData, spss.get to convert character variables having at least 2 characters in an observation but which have fewer than n/2 unique values to factors

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Revision 332 - Directory Listing
Modified Sun Oct 15 17:08:15 2006 UTC (3 years, 1 month ago) by harrelfe

fixed bug in summarize when stat.name=NULL

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Revision 331 - Directory Listing
Modified Sun Oct 15 16:17:15 2006 UTC (3 years, 1 month ago) by harrelfe

added freq argument

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Revision 330 - Directory Listing
Modified Sun Oct 15 05:07:08 2006 UTC (3 years, 1 month ago) by harrelfe

bug fixes

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Revision 329 - Directory Listing
Modified Sat Oct 14 22:29:33 2006 UTC (3 years, 1 month ago) by harrelfe

redefined what is returned by onlycuts

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Revision 326 - Directory Listing
Modified Sat Oct 14 16:54:47 2006 UTC (3 years, 1 month ago) by harrelfe

for plot with lattice method, puts number of curves in a cluster in the upper left corner of the panel

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Revision 325 - Directory Listing
Modified Thu Oct 12 22:38:19 2006 UTC (3 years, 1 month ago) by harrelfe

fixed curveSmooth

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Revision 324 - Directory Listing
Modified Thu Oct 12 22:11:54 2006 UTC (3 years, 1 month ago) by harrelfe

added clowess function

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Revision 323 - Directory Listing
Modified Thu Oct 12 03:28:10 2006 UTC (3 years, 1 month ago) by harrelfe

bug fix, enhance print

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Revision 322 - Directory Listing
Modified Thu Oct 12 02:00:19 2006 UTC (3 years, 1 month ago) by harrelfe

added to latexTranslate to preceed # by backslash

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Revision 319 - Directory Listing
Modified Mon Oct 9 20:43:04 2006 UTC (3 years, 1 month ago) by harrelfe

added new option smooth

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Revision 318 - Directory Listing
Modified Mon Oct 9 03:43:38 2006 UTC (3 years, 1 month ago) by harrelfe

*** empty log message ***

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Revision 316 - Directory Listing
Modified Sun Oct 8 18:42:26 2006 UTC (3 years, 1 month ago) by harrelfe

added getLatestSource function

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Revision 314 - Directory Listing
Modified Sun Oct 8 16:19:00 2006 UTC (3 years, 1 month ago) by harrelfe

*** empty log message ***

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Revision 313 - Directory Listing
Modified Sun Oct 8 16:18:01 2006 UTC (3 years, 1 month ago) by harrelfe

made use of keepmatrix dependent on summarization function returning more than one value

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Revision 312 - Directory Listing
Modified Sun Oct 8 16:07:39 2006 UTC (3 years, 1 month ago) by harrelfe

used keepmatrix argument to mApply so that when method='quantile' (and perhaps other things) is being used and there is only one stratum, will still return a matrix with row names containing stratum identifier

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Revision 311 - Directory Listing
Modified Sun Oct 8 16:06:41 2006 UTC (3 years, 1 month ago) by harrelfe

added keepmatrix argument to keep result as a matrix even if simplify=T

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Revision 310 - Directory Listing
Modified Sun Oct 8 16:00:15 2006 UTC (3 years, 1 month ago) by harrelfe

fixed bug where matrix form of other was being converted to vector if only one row; had destroyed ncol

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Revision 307 - Directory Listing
Modified Sun Oct 8 15:14:08 2006 UTC (3 years, 1 month ago) by harrelfe

changed default nx to NULL so defaults can be passed through calling functions

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Revision 306 - Directory Listing
Modified Sun Oct 8 04:35:52 2006 UTC (3 years, 1 month ago) by harrelfe

New major function to analyze serial data to plot representative curves after clustering time-response profiles

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Revision 305 - Directory Listing
Modified Sun Oct 8 03:49:56 2006 UTC (3 years, 1 month ago) by harrelfe

fixed typos lable and v1 (should have been v followed by lower case L)

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Revision 304 - Directory Listing
Modified Sat Oct 7 02:20:40 2006 UTC (3 years, 1 month ago) by harrelfe

added new argument onlycuts and cleaned up formatted, deleting old date stamps and commented out code

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Revision 302 - Directory Listing
Modified Mon Oct 2 18:46:50 2006 UTC (3 years, 1 month ago) by dupontct

minor changes to areg.s.  Removed COL and ROW from Misc.s
added documentation for ceilind.chron, floor.chron, and requirePackage

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Revision 300 - Directory Listing
Modified Mon Oct 2 15:46:18 2006 UTC (3 years, 1 month ago) by dupontct

Version bump for next Hmics version.
areg.s predict.areg  changed to have frist argument to be x instead of object to conform with the generic function def. Changed originl arg x to xdata.
       areg change x to xdata and y to ydata to be consitant with predict.areg.

add latexObject stuff to repository

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Revision 299 - Directory Listing
Modified Tue Sep 26 23:17:04 2006 UTC (3 years, 1 month ago) by harrelfe

re-wrote areg.boot to use areg (but default), removed ace as an option for it.  Note bug in formals<- hurts Function.areg.boot for categorical predictors

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Revision 298 - Directory Listing
Modified Tue Sep 26 23:15:59 2006 UTC (3 years, 1 month ago) by harrelfe

bug fixes

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Revision 296 - Directory Listing
Modified Mon Sep 25 21:32:01 2006 UTC (3 years, 1 month ago) by harrelfe

*** empty log message ***

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Revision 295 - Directory Listing
Modified Sat Sep 23 19:53:17 2006 UTC (3 years, 2 months ago) by harrelfe

fixed bug na,rm to na.rm

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Revision 293 - Directory Listing
Modified Sat Sep 23 19:48:56 2006 UTC (3 years, 2 months ago) by harrelfe

fixed bug - allow argument was omitted from stata.get definition

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Revision 292 - Directory Listing
Modified Sat Sep 23 18:20:20 2006 UTC (3 years, 2 months ago) by harrelfe

*** empty log message ***

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Revision 290 - Directory Listing
Modified Sat Sep 23 15:22:26 2006 UTC (3 years, 2 months ago) by harrelfe

added defaults for xtype, ytype

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Revision 289 - Directory Listing
Modified Sat Sep 23 14:47:01 2006 UTC (3 years, 2 months ago) by harrelfe

passed ... through to plot in plot.areg

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Revision 286 - Directory Listing
Modified Sat Sep 23 14:35:34 2006 UTC (3 years, 2 months ago) by harrelfe

major revision to use areg instead of acepack's ace and avas; monotone() restriction no longer allowed, new arguments, some old arguments removed

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Revision 285 - Directory Listing
Modified Sat Sep 23 14:34:07 2006 UTC (3 years, 2 months ago) by harrelfe

*** empty log message ***

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Revision 284 - Directory Listing
Modified Sat Sep 23 13:47:53 2006 UTC (3 years, 2 months ago) by harrelfe

changed tolerance argument default mechanism to match new lm.fit.qr.bare

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Revision 283 - Directory Listing
Modified Sat Sep 23 13:46:33 2006 UTC (3 years, 2 months ago) by harrelfe

change lm.fit.qr.bare to use NULL mechanism for missing tolerance

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Revision 282 - Directory Listing
Modified Sat Sep 23 13:34:22 2006 UTC (3 years, 2 months ago) by harrelfe

new function for additive transform-both-sides regression to replace uses of ace in acepack especially for aregImpute, also for areg.boot (latter not done yet)

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Revision 281 - Directory Listing
Modified Thu Sep 21 22:48:55 2006 UTC (3 years, 2 months ago) by harrelfe

allowed for knots=NULL to be treated as missing

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Revision 278 - Directory Listing
Modified Mon Sep 18 21:23:29 2006 UTC (3 years, 2 months ago) by harrelfe

*** empty log message ***

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Revision 277 - Directory Listing
Modified Thu Sep 7 20:17:51 2006 UTC (3 years, 2 months ago) by dupontct

Fixed a missing ... to dotchart2 in plot.summary.formula.reverse

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Revision 275 - Directory Listing
Modified Thu Aug 24 17:04:05 2006 UTC (3 years, 3 months ago) by dupontct

Fixed problem in dotchart2 with na values in an if statement

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Revision 273 - Directory Listing
Modified Mon Jul 17 19:08:26 2006 UTC (3 years, 4 months ago) by dupontct

   * fixed problem with over use of shQuote.

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Revision 272 - Directory Listing
Modified Tue Jun 27 15:36:07 2006 UTC (3 years, 4 months ago) by dupontct

Fixed somemore places with unquoted shell things

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Revision 271 - Directory Listing
Modified Tue Jun 27 15:29:38 2006 UTC (3 years, 4 months ago) by dupontct

fixed quoting problem in R version of sas.get.

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Revision 270 - Directory Listing
Modified Mon Jun 26 18:36:14 2006 UTC (3 years, 4 months ago) by dupontct

fixed quoting problem in sas.get.

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Revision 269 - Directory Listing
Modified Sat May 27 14:12:31 2006 UTC (3 years, 5 months ago) by harrelfe

fixed problem with Date variables in stata.get

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Revision 268 - Directory Listing
Modified Fri May 26 21:17:11 2006 UTC (3 years, 5 months ago) by harrelfe

added stata.get function

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Revision 266 - Directory Listing
Modified Mon Apr 24 16:29:04 2006 UTC (3 years, 7 months ago) by dupontct

fixed bug where format.df was not respecting the digits option if no formating arg was set.

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Revision 265 - Directory Listing
Modified Mon Apr 24 15:23:09 2006 UTC (3 years, 7 months ago) by dupontct

fixed bug in xYplot.s with missmatched arg names. fixed bug in format.df with options(digits) not being long enough.

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Revision 264 - Directory Listing
Modified Thu Apr 20 18:54:44 2006 UTC (3 years, 7 months ago) by dupontct

various fixes to make Rcheck happy

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Revision 263 - Directory Listing
Modified Thu Apr 20 17:06:53 2006 UTC (3 years, 7 months ago) by dupontct

added label.default and label<-.default and made label and label<- generic functions

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Revision 262 - Directory Listing
Modified Mon Apr 17 16:46:45 2006 UTC (3 years, 7 months ago) by dupontct

version bump

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Revision 259 - Directory Listing
Modified Mon Apr 17 15:19:42 2006 UTC (3 years, 7 months ago) by dupontct

mixed arg that did not do anything.

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Revision 258 - Directory Listing
Modified Mon Apr 17 14:17:06 2006 UTC (3 years, 7 months ago) by dupontct

R/summary.formula.s
  Change to use valueTags accessor functions.

R/valueTags.s
  "fun<-" args must be x, and value any other thing is not allowed.

man/label.Rd
  updated keywords.

moved R/copyright to COPYING file.

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Revision 256 - Directory Listing
Modified Fri Apr 14 19:00:18 2006 UTC (3 years, 7 months ago) by dupontct

Centralized labbeled functions into valueTags.  use the valueTag function to move all attributes to an object from an another object.

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Revision 255 - Directory Listing
Modified Fri Apr 14 16:33:17 2006 UTC (3 years, 7 months ago) by dupontct

Added NCOL and NROW function for Splus

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Revision 253 - Directory Listing
Modified Thu Apr 6 16:19:32 2006 UTC (3 years, 7 months ago) by dupontct

fixed documentaion for spss.get.Rd stata.get.Rd, and summary.formula. Added documnetation for getZip.

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Revision 252 - Directory Listing
Modified Thu Apr 6 14:00:11 2006 UTC (3 years, 7 months ago) by dupontct

removed subplot and cnvrt.coords now that they are in TeachingDemos.

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Revision 251 - Directory Listing
Modified Wed Apr 5 00:41:03 2006 UTC (3 years, 7 months ago) by dupontct

is.vector no longer returns true if any attribute other then "name" is set

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Revision 250 - Directory Listing
Modified Fri Mar 3 22:54:33 2006 UTC (3 years, 8 months ago) by harrelfe

Changed name of downloadZip to getZip

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Revision 249 - Directory Listing
Modified Fri Mar 3 22:51:40 2006 UTC (3 years, 8 months ago) by harrelfe

allowed url to be a local file

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Revision 248 - Directory Listing
Modified Fri Mar 3 20:52:17 2006 UTC (3 years, 8 months ago) by harrelfe

added password option to downloadZip

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Revision 247 - Directory Listing
Modified Fri Mar 3 20:39:35 2006 UTC (3 years, 8 months ago) by dupontct

Added ablity to specify seperator for as.character.mChoice function.  Also add ... to as.character.mChoice

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Revision 246 - Directory Listing
Modified Fri Mar 3 18:52:45 2006 UTC (3 years, 8 months ago) by harrelfe

Added utility function downloadZip for downloading and unzipping optionally password-protected zip file

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Revision 244 - Directory Listing
Modified Mon Feb 13 16:47:00 2006 UTC (3 years, 9 months ago) by dupontct

added reset.par option to plot.summary.formula.response

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Revision 243 - Directory Listing
Modified Wed Feb 8 20:56:58 2006 UTC (3 years, 9 months ago) by dupontct

Added ordTest argument to summary.formula to allow for tests specific to ordered factors

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Revision 242 - Directory Listing
Modified Wed Feb 8 20:45:41 2006 UTC (3 years, 9 months ago) by dupontct

fix Lag to handle shift = 0 and to be a little better coded.

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Revision 241 - Directory Listing
Modified Wed Feb 8 16:56:48 2006 UTC (3 years, 9 months ago) by dupontct

fixed Lag function to correctly handle cases where shift >= length(x).

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Revision 235 - Directory Listing
Modified Mon Jan 9 21:00:03 2006 UTC (3 years, 10 months ago) by dupontct

Formula arg to histogram function no longer exists.

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Revision 234 - Directory Listing
Modified Thu Jan 5 19:58:59 2006 UTC (3 years, 10 months ago) by dupontct

FUN cannot default to value NULL.

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Revision 233 - Directory Listing
Modified Thu Jan 5 19:57:05 2006 UTC (3 years, 10 months ago) by dupontct

Split mApply into separate source and doc files.

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Revision 232 - Directory Listing
Modified Thu Jan 5 16:39:59 2006 UTC (3 years, 10 months ago) by dupontct

patched sas code in sas.get.s file to fix sas parse errors

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Revision 231 - Directory Listing
Modified Fri Dec 16 20:45:57 2005 UTC (3 years, 11 months ago) by harrelfe

changed ecdf.default to use raw x for datadensity plots rather than x from wtd.ecdf.  In the case where n=1, this had been causing scat1d with jittering to show n=2

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Revision 229 - Directory Listing
Modified Fri Nov 4 17:31:31 2005 UTC (4 years ago) by dupontct

Added function cnvt.coords and documentation to Hmisc

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Revision 228 - Directory Listing
Modified Thu Oct 27 17:34:46 2005 UTC (4 years ago) by dupontct

Fixed formula bug in transcan()

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Revision 227 - Directory Listing
Modified Thu Sep 29 22:31:40 2005 UTC (4 years, 1 month ago) by dupontct

fixed logrithmic plot bug

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Revision 225 - Directory Listing
Modified Mon Sep 26 15:44:17 2005 UTC (4 years, 1 month ago) by dupontct

Added stata.get function to retreve stata data files into Hmisc format

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Revision 224 - Directory Listing
Modified Mon Sep 26 15:15:33 2005 UTC (4 years, 1 month ago) by harrelfe

Fixed previous fix - used n[i] instead of n related to mChoice vars

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Revision 223 - Directory Listing
Modified Fri Sep 23 20:46:54 2005 UTC (4 years, 2 months ago) by harrelfe

Fixed problem when method='reverse' and there is no response variable, when mChoice variables used.  Need to check that replacing group.freq with n in object created by summary.formula is correct in this case.  This fixes print.summary.formula.reverse and latex. and response also.

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Revision 222 - Directory Listing
Modified Mon Sep 19 19:43:04 2005 UTC (4 years, 2 months ago) by dupontct

Fixed bug with upData with lowernames=T

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Revision 221 - Directory Listing
Modified Mon Sep 19 19:24:23 2005 UTC (4 years, 2 months ago) by dupontct

Fixed bug in bystats function

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Revision 220 - Directory Listing
Modified Mon Sep 19 19:21:42 2005 UTC (4 years, 2 months ago) by dupontct

fixed bug in predict.transcan

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Revision 219 - Directory Listing
Modified Mon Sep 19 17:57:54 2005 UTC (4 years, 2 months ago) by dupontct

Added subplot function and documentation from Greg Snow

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Revision 218 - Directory Listing
Modified Thu Sep 15 20:43:52 2005 UTC (4 years, 2 months ago) by dupontct

minor syntax errors and version bump.

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Revision 216 - Directory Listing
Modified Fri Sep 9 20:20:00 2005 UTC (4 years, 2 months ago) by dupontct

Fixed error in reading csv files with comment characters

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Revision 215 - Directory Listing
Modified Wed Sep 7 13:48:52 2005 UTC (4 years, 2 months ago) by dupontct

Added Splus wrappers for compatiblity with R internationalization

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Revision 213 - Directory Listing
Modified Wed Sep 7 12:46:12 2005 UTC (4 years, 2 months ago) by dupontct

Fixed legend to work with latex longtable environment.

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Revision 212 - Directory Listing
Modified Wed Aug 31 21:52:11 2005 UTC (4 years, 2 months ago) by dupontct

Fixed latex.default's behavior when dealing with longtable.  Now correctly displays table footer.

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Revision 211 - Directory Listing
Modified Fri Aug 26 20:49:55 2005 UTC (4 years, 2 months ago) by harrelfe

Fixed impute.transcan to force all variables to be in the data object when it is specified.  Fixed problem with getting wrong length of a free-standing variable because it doesn't have row names.  Also cleaned up a lot of old comments.

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Revision 210 - Directory Listing
Modified Fri Jul 15 17:50:54 2005 UTC (4 years, 4 months ago) by harrelfe

Fixed spss date format

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Revision 209 - Directory Listing
Modified Fri Jul 15 17:03:34 2005 UTC (4 years, 4 months ago) by harrelfe

Fixed spss dates

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Revision 208 - Directory Listing
Modified Tue Jul 12 22:01:34 2005 UTC (4 years, 4 months ago) by dupontct

Tabification of all Hmisc Files

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Revision 207 - Directory Listing
Modified Tue Jul 12 22:01:05 2005 UTC (4 years, 4 months ago) by dupontct

Tabification of all Hmisc files

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Revision 205 - Directory Listing
Modified Fri Jun 10 17:22:15 2005 UTC (4 years, 5 months ago) by harrelfe

Fixed auxCol in latex.summary.formula.reverse to expand to match the number of rows used for statistics, when categorical variables are being summarized.

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Revision 204 - Directory Listing
Modified Tue Jun 7 15:59:38 2005 UTC (4 years, 5 months ago) by dupontct

Retabified latex.s

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Revision 203 - Directory Listing
Modified Wed Jun 1 16:58:10 2005 UTC (4 years, 5 months ago) by dupontct

Fixed issue in html.latex of ignoring the file= argument.

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Revision 202 - Directory Listing
Modified Wed Jun 1 14:53:16 2005 UTC (4 years, 5 months ago) by dupontct

Fixed error in describe.vector.  oldUnclass() returnes a values unworkable when unclassing a timeDate class.  Fixed to pass timeDate object directly to format which correctly deals with that data class.  But this time with the changes saved.

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Revision 201 - Directory Listing
Modified Wed Jun 1 14:48:06 2005 UTC (4 years, 5 months ago) by dupontct

Fixed error in describe.vector.  oldUnclass() returnes a values unworkable when unclassing a timeDate class.  Fixed to pass timeDate object directly to format which correctly deals with that data class.

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Revision 200 - Directory Listing
Modified Wed Jun 1 14:37:02 2005 UTC (4 years, 5 months ago) by harrelfe

Fixed sasxport.get to ignore leading and trailing blanks in PROC FORMAT information, especially when sensing a . for a value

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Revision 198 - Directory Listing
Modified Wed Jun 1 14:32:45 2005 UTC (4 years, 5 months ago) by harrelfe

Made all.is.numeric remove leading and trailing blanks before examining extras

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Revision 197 - Directory Listing
Modified Wed Jun 1 14:06:35 2005 UTC (4 years, 5 months ago) by harrelfe

Added new arg to all.is.numeric, changed default so that . and NA are counted as numerics

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Revision 192 - Directory Listing
Modified Fri May 20 18:48:11 2005 UTC (4 years, 6 months ago) by harrelfe

Added auxCol argument to latex.summary.formula.reverse to allow user to add last-second extra column in front of statistics, e.g., planned sample sizes.

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Revision 191 - Directory Listing
Modified Fri May 20 16:06:35 2005 UTC (4 years, 6 months ago) by harrelfe

Changed to using dot charts for character or factor variables.  Improved resetting of par('mar') taking into account that mfrow changes mar.

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Revision 190 - Directory Listing
Modified Wed May 18 02:42:42 2005 UTC (4 years, 6 months ago) by harrelfe

Initialized cline to NULL earlier.  User got undefined cline with latex.default(cohortbyagesummary,
    caption="Five Number Age Summaries by Cohort",
    label="agesummarybycohort",
    cgroup=c('hello','goodbye','hello'),
    colheads=c("Age","Ethnicity"),
    extracolheads=c('hello','goodbye'),
    greek=TRUE,
    ctable=TRUE)

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Revision 189 - Directory Listing
Modified Fri May 13 20:37:07 2005 UTC (4 years, 6 months ago) by harrelfe

detected blank values from format values to exclude

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Revision 182 - Directory Listing
Modified Mon May 9 20:11:11 2005 UTC (4 years, 6 months ago) by harrelfe

Fixed bug in split( ) with new code related to nmin

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Revision 181 - Directory Listing
Modified Mon May 9 16:16:54 2005 UTC (4 years, 6 months ago) by dupontct

Fixed to allow use of user supplied col.just option in latex.summary.formula.cross

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Revision 178 - Directory Listing
Modified Wed May 4 17:30:02 2005 UTC (4 years, 6 months ago) by dupontct

Fixed bug with fileShow function in sas.get function.

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Revision 177 - Directory Listing
Modified Tue May 3 16:41:32 2005 UTC (4 years, 6 months ago) by dupontct

Fixed tempdir() to work correctly in Splus.

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Revision 176 - Directory Listing
Modified Tue May 3 16:19:32 2005 UTC (4 years, 6 months ago) by dupontct

fix readLines in dvi.latex to read to EOF.

Splus7 readLines defaults to n=1.  Adding n=-1 was required to read to EOF.

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Revision 173 - Directory Listing
Modified Fri Apr 22 15:28:57 2005 UTC (4 years, 7 months ago) by whitingd

latex.s:
Added code to allow the user to specify latex formats for rownames,
row group labels, column names, column group labels and individual
cells within an object. New options are: rownamesTexCmd,
rgroupTexCmd, colnamesTexCmd, cgroupTexCmd, and cellTexCmds. Changed the
name of labsTexCmd.

Also added some comments as I went along working out which bit of
code did what.

latex.Rd
Added help on new formatting options to latex.Rd.

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Revision 172 - Directory Listing
Modified Thu Apr 21 21:30:43 2005 UTC (4 years, 7 months ago) by harrelfe

*** empty log message ***

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Revision 171 - Directory Listing
Modified Thu Apr 21 20:48:19 2005 UTC (4 years, 7 months ago) by harrelfe

Fixed greek arg in latex

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Revision 167 - Directory Listing
Modified Thu Apr 14 19:04:04 2005 UTC (4 years, 7 months ago) by harrelfe

david.whiting@ncl.ac.uk: when using row or column groups the use of \bf to format the rgroup
and cgroup labels has sometimes caused me problems when I am using
particular fonts. I have made some minor changes to latex.s that
allow the user to specify a latex command to use when formatting the
row and column group labels. I don't think that it should break
anything else. I have set the default to use \bfseries instead of
\bf as this changes only the series and not other aspects of the
font.

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Revision 165 - Directory Listing
Modified Tue Mar 15 04:25:19 2005 UTC (4 years, 8 months ago) by harrelfe

Added stripChart function, conType='raw' for plot.summary.formula.reverse

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Revision 159 - Directory Listing
Modified Sun Mar 6 01:57:27 2005 UTC (4 years, 8 months ago) by harrelfe

Added new argument na.include to summary.formula and distinguished from na.rm.  Added prn argument to latex.summary.formula.response

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Revision 157 - Directory Listing
Modified Thu Jan 20 16:20:55 2005 UTC (4 years, 10 months ago) by harrelfe

Quit deleting rows of result of summarize when NAs present.  Thanks: Denis Chabot <chabotd@globetrotter.net>.  Cleanup of formatting if first half of source file.

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Revision 155 - Directory Listing
Modified Wed Jan 12 02:24:33 2005 UTC (4 years, 10 months ago) by harrelfe

Changed external file commands to use fast C system-independent functions for S-Plus.  Thanks: Bill Dunlap and Sherry LaMonica of Insightful Corp.

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Revision 153 - Directory Listing
Modified Sat Jan 8 01:50:01 2005 UTC (4 years, 10 months ago) by harrelfe

Improved plotmathTranslate so that if a variable label or units starts with /, phantom() will be inserted before it.  This will allow plotmath to use for example units of measurement like /mm^3.

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Revision 151 - Directory Listing
Modified Thu Jan 6 03:42:14 2005 UTC (4 years, 10 months ago) by harrelfe

summary.formula - made catTest sense only one column as well as only one row, to prevent running
chisq GOF test in place of multi-group chisq test.
plot.summary.formula.reverse: Created dummy Key in case of only one group, to prevent Key from earlier run being carried forward.

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Revision 150 - Directory Listing
Modified Sat Dec 25 17:59:20 2004 UTC (4 years, 10 months ago) by harrelfe

*** empty log message ***

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Revision 148 - Directory Listing
Modified Sat Dec 25 17:56:07 2004 UTC (4 years, 10 months ago) by harrelfe

Fixed impute.transcan when n.impute not being used.  Now uses names(imputed vector) when dimnames not present.  If list.out omitted (not recommended), changed for R to always put imputed variables in .GlobalEnv.

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Revision 147 - Directory Listing
Modified Sat Dec 25 16:10:31 2004 UTC (4 years, 10 months ago) by harrelfe

Changed all latex methods to pass greek=TRUE to latexTranslate if R is being used

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Revision 146 - Directory Listing
Modified Sat Dec 25 16:02:14 2004 UTC (4 years, 10 months ago) by harrelfe

Added greek argument to latex.describe.  Default is TRUE, changing default behavior to translate greek letter names in variable labels (e.g., alpha) to e.g. $\alpha$

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Revision 145 - Directory Listing
Modified Sat Dec 25 15:12:26 2004 UTC (4 years, 10 months ago) by harrelfe

Added greek argument to latexTranslate.  Used mainly for latex.describe.  Default is no greek letter translation.

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Revision 143 - Directory Listing
Modified Wed Dec 22 05:16:57 2004 UTC (4 years, 11 months ago) by harrelfe

Fixed csv.get to use allow argument

spss.get file can be URL, added lowernames and allow arguments.
New default behavior: underscores in variable names converted to periods.

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Revision 137 - Directory Listing
Modified Sun Dec 12 13:26:19 2004 UTC (4 years, 11 months ago) by harrelfe

Added new argument to sasxport.get: as.is.  CHANGES DEFAULT BEHAVIOR: default as.is is 0.5 as in sas.get, causing imported SAS character variables to become factors if the number of unique values exceeds half the number of rows.

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Revision 136 - Directory Listing
Modified Fri Dec 10 19:41:21 2004 UTC (4 years, 11 months ago) by harrelfe

Fixed show.dvi when options(xdvicmd='kdvi')

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Revision 135 - Directory Listing
Modified Fri Dec 10 19:30:15 2004 UTC (4 years, 11 months ago) by harrelfe

Fixed sasxport.get method='csv' to handle case where user had already created a _contents_ dataset in the current SAS session, which was causing _contents_.csv to try to describe itself.

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Revision 133 - Directory Listing
Modified Sun Dec 5 15:37:36 2004 UTC (4 years, 11 months ago) by harrelfe

For R changed postscript( ) in psfig (called from setps) to specific paper='special'

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Revision 132 - Directory Listing
Modified Tue Nov 30 22:24:37 2004 UTC (4 years, 11 months ago) by harrelfe

Another place to fix to drop unused levels

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Revision 131 - Directory Listing
Modified Tue Nov 30 15:29:46 2004 UTC (4 years, 11 months ago) by harrelfe

Fixed summary.formula for method='reverse' or 'cross' to drop unused levels in response or independent variables, respectively, when they are factors.

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Revision 130 - Directory Listing
Modified Mon Nov 29 18:03:29 2004 UTC (4 years, 11 months ago) by harrelfe

Fixed bug in argument names passed to ace().  Fixed printing of r-squared.

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Revision 129 - Directory Listing
Modified Mon Nov 29 18:02:51 2004 UTC (4 years, 11 months ago) by harrelfe

Added out= and FUN= to sasxport.get with method='csv'

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Revision 128 - Directory Listing
Modified Mon Nov 29 18:02:14 2004 UTC (4 years, 11 months ago) by harrelfe

Added Load and Save functions

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Revision 120 - Directory Listing
Modified Wed Nov 24 12:53:02 2004 UTC (4 years, 11 months ago) by harrelfe

Removed obsolete require()s

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Revision 115 - Directory Listing
Modified Sun Nov 21 15:49:35 2004 UTC (5 years ago) by harrelfe

Changed generation of Key and sKey functions to use rlegendg, changed default x and y placement to (0.05,.95) with respect to entire plotting region.

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Revision 114 - Directory Listing
Modified Sun Nov 21 15:48:30 2004 UTC (5 years ago) by harrelfe

Fixed mApply to find names of statistics in column names of a matrix if not in names() attribute returned by FUN

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Revision 113 - Directory Listing
Modified Sun Nov 21 15:47:52 2004 UTC (5 years ago) by harrelfe

[.factor no longer created.  New function dropUnusedLevels defined, upon invocation will create temporary [.factor in .GlobalEnv

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Revision 112 - Directory Listing
Modified Sun Nov 21 15:47:04 2004 UTC (5 years ago) by harrelfe

Added rlegendg function to replace rlegend when grid is in effect

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Revision 111 - Directory Listing
Modified Sun Nov 21 15:46:28 2004 UTC (5 years ago) by harrelfe

Changed message to say NOTE: old default behavior of replacing [.factor to by default drop unused levels has been removed, and that dropUnusedLevels() must be called to restore this behavior.

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Revision 106 - Directory Listing
Modified Fri Nov 19 19:45:39 2004 UTC (5 years ago) by harrelfe

Added fixdates argument to cleanup.import and csv.get to handle certain exceptions in fields listed in datevars, e.g. some observations having a 2-digit vs. a 4-digit year.

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Revision 105 - Directory Listing
Modified Fri Nov 19 17:00:02 2004 UTC (5 years ago) by harrelfe

Removed because R's interaction has sep= argument.  Sacrificing left= argument

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Revision 102 - Directory Listing
Modified Fri Nov 19 15:59:35 2004 UTC (5 years ago) by harrelfe

Always defined pchVaries - bug fix

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Revision 101 - Directory Listing
Modified Fri Nov 19 15:34:03 2004 UTC (5 years ago) by harrelfe

Added ability to vary plotting symbol with data using size, when rangeCex is a scalar; fixed bug in which rangeCex should not have been an argument to xYplot

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Revision 98 - Directory Listing
Modified Fri Nov 12 04:01:27 2004 UTC (5 years ago) by harrelfe

Finished bubble plot implementation for now

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Revision 97 - Directory Listing
Modified Fri Nov 12 04:00:59 2004 UTC (5 years ago) by harrelfe

Messing with rlegend for bubble plots

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Revision 95 - Directory Listing
Modified Wed Nov 10 23:29:03 2004 UTC (5 years ago) by harrelfe

Improved rlegend to not make multiple boxes if cex varies, and to better align text when this happens.

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Revision 93 - Directory Listing
Modified Wed Nov 10 15:02:14 2004 UTC (5 years ago) by harrelfe

Grid/Lattice now support expressions in axis labels, so label( ) was changed to allow this if grid=TRUE

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Revision 92 - Directory Listing
Modified Fri Nov 5 03:46:10 2004 UTC (5 years ago) by harrelfe

Suppressed page numbers in dvi.latex (used by dvips etc.)

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Revision 87 - Directory Listing
Modified Sat Oct 16 19:23:38 2004 UTC (5 years, 1 month ago) by harrelfe

New argument xscale for Dotplot

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Revision 85 - Directory Listing
Modified Thu Oct 7 18:38:30 2004 UTC (5 years, 1 month ago) by harrelfe

Fixed bug in labcurve to check for xlab and ylab being expressions before checking whether they are blank

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Revision 83 - Directory Listing
Modified Tue Oct 5 04:17:34 2004 UTC (5 years, 1 month ago) by harrelfe

Fixed when longtable=TRUE to put size changes inside { } so won't have lasting effect

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Revision 82 - Directory Listing
Modified Thu Sep 30 22:27:58 2004 UTC (5 years, 1 month ago) by harrelfe

Added keep and drop arguments to sasxport.get

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Revision 80 - Directory Listing
Modified Thu Sep 30 22:23:20 2004 UTC (5 years, 1 month ago) by harrelfe

Removed a LaTeX \\ from latex.summary.formula.reverse

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Revision 77 - Directory Listing
Modified Wed Sep 15 03:29:56 2004 UTC (5 years, 2 months ago) by harrelfe

Fixed formatCats (used by [print,latex].summary.formula.reverse) to check number of columns in stats against length of column levels instead of 1, to put in placeholder NAs.

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Revision 70 - Directory Listing
Modified Sun Sep 5 16:21:08 2004 UTC (5 years, 2 months ago) by harrelfe

Fixed bug in spss.get - was reference now unused argument for date types

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Revision 68 - Directory Listing
Modified Sat Sep 4 21:06:45 2004 UTC (5 years, 2 months ago) by harrelfe

Added new way to handle multiple id variables (e.g., subject ID and visit when repeating factor is which lab parameter is being defined and colvar is the value of that parameter).  With a data frame for id, even when id has a single variable, the result of reShape will be a data frame.  Also added new argument constant for this option, which is a data frame for variables to carry along.

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Revision 66 - Directory Listing
Modified Fri Sep 3 21:21:05 2004 UTC (5 years, 2 months ago) by harrelfe

Enhanced sepUnitsTrans to also convert weeks to days

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Revision 65 - Directory Listing
Modified Sat Aug 21 12:53:53 2004 UTC (5 years, 3 months ago) by harrelfe

Changed storage mode of result to integer before adding class 'factor' to make sure result is a real factor.  Thanks: tlumley@u.washington.edu

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Revision 64 - Directory Listing
Modified Fri Aug 20 02:57:15 2004 UTC (5 years, 3 months ago) by harrelfe

Removed %in% function; caused survey package to fail by overriding builtin %in% which does not ever convert a factor to its numeric codes.  Thanks: andrewr@uidaho.edu

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Revision 58 - Directory Listing
Modified Sat Aug 14 22:35:00 2004 UTC (5 years, 3 months ago) by harrelfe

Changed date-time variables to use chron instead of POSIXCT.

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Revision 56 - Directory Listing
Modified Sun Jul 18 18:03:04 2004 UTC (5 years, 4 months ago) by harrelfe

Made print.summary.formula.cross more likely to work (using print.data.frame) when there are more than 2 classification factors.

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Revision 54 - Directory Listing
Modified Sun Jul 11 14:38:51 2004 UTC (5 years, 4 months ago) by harrelfe

Remove verbose argument from .First.lib since R does not pass this.  Instead sense system option Hverbose.  If not specified or FALSE will suppress information messages.

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Revision 53 - Directory Listing
Modified Thu Jun 24 13:59:19 2004 UTC (5 years, 5 months ago) by harrelfe

Fixed bug in plot.transcan where R2 values are found

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Revision 52 - Directory Listing
Modified Sun Jun 20 13:56:24 2004 UTC (5 years, 5 months ago) by harrelfe

Fixed impute.transcan (used by fit.mult.impute) - was not having
access to observation numbers of imputed observations when there was
only one missing value for a variable.  Thanks: david_foreman@doctors.org.uk.

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Revision 51 - Directory Listing
Modified Sun Jun 20 13:52:30 2004 UTC (5 years, 5 months ago) by harrelfe

Fixed histSpike to not bin data if n <= 10

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Revision 46 - Directory Listing
Modified Wed Jun 2 21:47:21 2004 UTC (5 years, 5 months ago) by harrelfe

Fixed importConvertDateTime to not call 4th argument 'format'; conflicted with format function in R.  Changed calls to it using a named 4th argument to rename argument 'form'.

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Revision 45 - Directory Listing
Modified Tue Jun 1 22:22:42 2004 UTC (5 years, 5 months ago) by harrelfe

For sasxport.get with method='csv' changed (by default) to convert underscores in names from csv file to periods, so will match the conversion from the SAS PROC CONTENTS import.

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Revision 42 - Directory Listing
Modified Tue Jun 1 12:43:43 2004 UTC (5 years, 5 months ago) by harrelfe

Made sure that \begin{verbatim} begins on a new line, and a new line appears after \end{verbatim}.

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Revision 40 - Directory Listing
Modified Tue Jun 1 02:31:46 2004 UTC (5 years, 5 months ago) by harrelfe

Moved existsFunction out of model.frame.default.s into AFirst.lib.s.

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Revision 39 - Directory Listing
Modified Tue Jun 1 02:30:59 2004 UTC (5 years, 5 months ago) by harrelfe

Defined existsFunction in AFirst.lib.s in Hmisc to defined before other conditional functions are defined.  Moved out of model.frame.default.s

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Revision 38 - Directory Listing
Modified Tue Jun 1 02:28:33 2004 UTC (5 years, 5 months ago) by harrelfe

Renamed First.lib.s AFirst.lib.s to make sure will put in front of package source file.

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Revision 36 - Directory Listing
Modified Fri May 28 18:49:13 2004 UTC (5 years, 5 months ago) by harrelfe

Removed compatibilities with grid functions for R < 1.9.   Replaced usage of width and height (not in grid namespace) with grobWidth, grobHeight.  Removed old commented-out code.

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Revision 35 - Directory Listing
Modified Fri May 28 18:44:55 2004 UTC (5 years, 5 months ago) by harrelfe

Change parGrid to use convertX, convertY instead of current.viewport.  Thanks: Paul Murrell.

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Revision 34 - Directory Listing
Modified Thu May 27 14:08:25 2004 UTC (5 years, 5 months ago) by harrelfe

Changed to use latest grid functions; assuming everyone is using R >= 1.9 now.
Removed several commented-out lines.

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Revision 32 - Directory Listing
Modified Wed May 26 18:37:02 2004 UTC (5 years, 5 months ago) by harrelfe

Fixed syntax error in recent fit.mult.impute change

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Revision 29 - Directory Listing
Modified Tue May 25 13:01:28 2004 UTC (5 years, 6 months ago) by harrelfe

By default, override make.names in R 1.9 for sasxport.get and csv.get so that underscores in variable names are still converted to periods.  New argument "allow" can change this to allow underscores in names.  Used new function makeNames in Misc.s.

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Revision 28 - Directory Listing
Modified Tue May 25 12:45:26 2004 UTC (5 years, 6 months ago) by harrelfe

Added makeNames function to make it easy to convert _ to . by default with make.names, unlike R 1.9.

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Revision 24 - Directory Listing
Modified Mon May 24 13:21:12 2004 UTC (5 years, 6 months ago) by harrelfe

Cleaned up all code for importing SAS and SPSS dates in numeric form.  For R changed date variables to Date class rather than POSIXct.  Kept POSIX for times, date/times.  Removed chron support in spss.get.

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Revision 21 - Directory Listing
Modified Fri May 21 19:56:37 2004 UTC (5 years, 6 months ago) by harrelfe

Handle R 1.9 Date variables on x-axis.

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Revision 20 - Directory Listing
Modified Fri May 21 19:56:04 2004 UTC (5 years, 6 months ago) by harrelfe

Modified formatDateTime and testDateTime to work with R 1.9 Date class

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Revision 18 - Directory Listing
Modified Fri May 21 19:54:51 2004 UTC (5 years, 6 months ago) by harrelfe

Added abbrev argument to print.varclus, changed default behaviour to not abbreviate labels.

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Revision 16 - Directory Listing
Modified Sat May 8 13:03:39 2004 UTC (5 years, 6 months ago) by harrelfe

Made latex.describe handle & in variable labels

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Revision 15 - Directory Listing
Modified Fri May 7 04:26:42 2004 UTC (5 years, 6 months ago) by harrelfe

Corrected fit.mult.impute to pass ... arguments to fitting function.   Adapated to work correctly with models that have a scale parameter (e.g. psm).  Check whether length of the
 coefficient vector is different from the the number of rows of
 the covariance matrix. If so, the model contains scale parameters that are not fixed at some value and we have to append the scale parameters to the coefficient vector.
Thanks: Rainer Dyckerhoff <dyckerhoff@wiso.uni-koeln.de>.

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Revision 14 - Directory Listing
Modified Wed May 5 16:38:04 2004 UTC (5 years, 6 months ago) by harrelfe

In plot.varclus corrected for R 1.9 patched by not comparing an expression to 'NULL'.  Thanks: Kurt Hornik.

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Revision 12 - Directory Listing
Modified Mon Apr 26 19:17:46 2004 UTC (5 years, 6 months ago) by harrelfe

Fixed sasxport.get to not assume information on variables (e.g., output of PROC CONTENTS) is any particular order (for labels and formats).

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Revision 11 - Directory Listing
Modified Fri Apr 23 14:00:59 2004 UTC (5 years, 7 months ago) by harrelfe

Fixed describe.vector to handle NA in character vectors for R

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Revision 8 - Directory Listing
Modified Thu Apr 22 12:08:38 2004 UTC (5 years, 7 months ago) by harrelfe

Fixed version detection for grid changes so that R version 2 is handled.  Thanks: Kurt Hornik.

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Revision 5 - Directory Listing
Modified Wed Apr 21 17:16:45 2004 UTC (5 years, 7 months ago) by harrelfe

Fixed bug c(lo,hi) causing factor levels to be lost; put formatting internal to c( ) as well as external to it.  In describe.vector.

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Revision 4 - Directory Listing
Modified Wed Apr 21 17:16:04 2004 UTC (5 years, 7 months ago) by harrelfe

Added method='csv' to sasxport.get, and 2 utility functions that make this option work.

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Revision 2 - Directory Listing
Added Wed Apr 21 15:19:22 2004 UTC (5 years, 7 months ago) by hornerjr

Initial revision