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2010BiostatisticsSeminarSeries
2010 Biostatistics Seminar/Workshop Series December * December 29 No Seminar Holiday break * December 22 No Seminar Holiday break * December 15 Measuring ...
2016DeptRetreat
2016 Department of Biostatistics Faculty Staff Retreat, 3 June 2016 Hachland Hill Countryside RetreatJoelton, TN 37080Friday 2016 06 038am 8pm At the retreat we ...
AJiangJan20
Department of Biostatistics Seminar/Workshop Series Microarray data analysis across multiple datasets Aixiang Jiang, MS Assistant in Biostatistics, Division of ...
ASAP
ASAP: An open source framework for building and executing a pipeline to preprocess next generation sequence data and variant calls. Advanced Sequence Automated Pipeline ...
ASAPChangeLists
ASAP Changelist V1.1.7 The following items have been changed/corrected or added in version 1.17 of ASAP. Item Notes Date Completed Added ability to run ...
ActiveSurveillance
Main.JoAnnAlvarez 28 Mar 2014 Active Surveillance Project Questions: * In PCOS data, is there a systematic difference in patients who have complete staging info ...
AixiangJiang
Aixiang Jiang, MS Assistant in Biostatistics Email: aixiang.jiang #64;vanderbilt.edu Phone: 615.936.7360Fax: 615.936.2602 Education * Master of Science ...
AlexFun
My R Functions Create time intervals data for time varying covariates in survival analysis When several time varying covariates present in survival analysis, creating ...
AlfrescoGit
Alfresco and version control using git (under construction) Goals * Be able to share analysis reports and programs used to create reports on Alfresco * Allow ...
AlfrescoPresentationNotes
What is Alfresco? Alfresco Community Edition is an open source software platform for Enterprise Content Management. Enterprise content management is a "means of organizing ...
ArchivedAnalyses
Archived Analyses Manuscript Code Report with Simulated Data Shepherd BE, Liu Q, Wanga V, Li C. Probability scale residuals in HIV/AIDS research: diagnostics ...
AriDescription
ARI Dataset These are the datasets analyzed in Chapter 14 of Regression Modeling Strategies and in . The main dataset is ari, and a file ari_other.sav contains the ...
AzBoImaging
Main.AlexZhao 14 Feb 2012 Time Tracking Date Hours Spend Description Total 139.5 Since 2011 09 01 2012 05 07 1 Meeting with Dan: Manuscript ...
BayesianDataAnalysisWithOpenBUGSAndBRugs
Bayesian Data Analysis With OpenBUGS, BRugs, and JAGS IBC *members: Yi He, William Wu, Heidi Chen, Angel An, Cindy Chen and Chuan Zhou Software download: * WinBUGS ...
BioinfMachineInterface
Bioinformatics and Machine Learning The committee felt that setting up a unit in direct competition with other groups and advertising ourselves as a full resource ...
Bios330Assign0
BIOS 330 Assignment Zero Your assignment is to install and configure R, RStudio, and LaTeX or Markdown and to produce a pdf file from the reproducible knitr document ...
BiostatIIData
Vanderbilt University Master of Public Health Biostatistics II The following data sets are used in my class. See the reference for these data sources here. Stata ...
BradleyCarlinFebruary192014
Department of Biostatistics Seminar/Workshop Series A Bayesian Missing Data Framework for Combining Multiple Outcomes in Mixed Treatment Comparisons using Aggregate ...
BruceSwihartMarch242014
Department of Biostatistics Seminar/Workshop Series Sleep Hypnograms, Insurance Claims, Hand Movement After Stroke: Big Data and Potentially Many Weak, Predictive ...
CLiApr14
Department of Biostatistics Seminar/Workshop Series A New Residual for Ordinal Outcomes Chun Li, PhD Associate Professor, Department of Biostatistics, Vanderbilt ...
CTSAPersonnel
D. Personnel Faculty and staff biostatistics in the Design, Biostatistics, and Clinical Research Ethics Program who will be devoted to VICTR represent a broad spectrum ...
CTSAbMeetings
VICTR CTSA Biostatistics Group Meetings 2015 Jan 14 Attending: * VICTR biostat support guideline: http://biostat.mc.vanderbilt.edu/VICTRBiostatPolicies * Annual ...
CYuOct14
Department of Biostatistics Seminar/Workshop Series A parametric model to estimate the proportion from true null in microarray studies Chang Yu, PhD Assistant Professor ...
CancerBiostatWorkshop
2012 Center for Quantitative Sciences Workshop * Date: Third Friday of every month ( July, August, December) * Time: noon 1 pm (Lunch will be provided) ...
CenterForSurgQualOutcomes
Main.JoAnnAlvarez 09 Nov 2012 Vanderbilt Center for Surgical Quality Outcomes Research Projects on their own page * CeasarData * CeasarProjTxVars * CeasarProject ...
CepiPlans
Baby Books Project Documents Baby Books Research Aims: Here is an editable document that includes prioritized research aims for the Baby Books project. Logic Model ...
ChangelogDesign
Design Package Change Log This change log is now handled by CVS. See it here. 1996 1997 1998 1999 2000 2001 2002 2003 2004 #LoG96 1996 Submitted ...
ChangelogHmisc
Hmisc Package Change Log This change log is now handled by CVS. See it here. 1996 1997 1998 1999 2000 2001 2002 2003 2004 #LoG96 1996 Submitted ...
ChrisFonnesbeck092717
Department of Biostatistics Seminar/Workshop Series Scaling Bayes: Probabilistic Modeling for Large Models and Datasets Chris Fonnesbeck, PhD, Assistant Professor ...
ChuanZhou
Chuan Zhou, PhD Assistant Professor of Biostatistics E mail: chuan.zhou@vanderbilt.edu Phone: 615.343.4472 Fax: 615.343.4924 Office: MCN D 2207Vanderbilt ...
ChunStataNotes
Chun's Stata Notes In this page, EMS refers to Essential Medical Statistics, a very good introductory book on biostatistics. Getting help Help pages: Type help ...
ClinModVal
Validation of Discoveries and Validation of the Predictive Performance of Clinical Models Note: On 1Nov04, Steve Goodman, statistical editor of the Annals of Internal ...
ClinPharmCoursePlans
Notes and Plans for Biostatistics Course for Clinical Pharmacology Fellows * Less didactic with more examples and more practical information * Hammer simple ...
ClinPharmLabs
Labs for Data Analysis Periodically we will devote a class session to applied data analysis. The purpose of the lab is two fold: (1) to assist with planning your analysis ...
ClinPharmSyllabus
Biostatistics for Clinical Pharmacology Fellows Instructors: Chris Slaughter and Frank Harrell Course page: http://biostat.mc.vanderbilt.edu/ClinStat Course Goals ...
ClinicAnalyses
Data and Analysis for Clinical and Health Research Clinic Click here for older notes 2017 December 14 NO CLINIC: Department Meeting 2017 December 7 Maria Powell ...
ClinicAnalysesArchive
Data and Analysis for Clinical and Health Research Clinic Archive Current Notes 2013 Dec 19 Bennett Spetalnick, Tara A.Nielsen, OB/GYN * Retrospective study ...
ClinicIdeasFuture
Questions: * Will the days of the week still have themed topics? For example, currently Wednesday is for surgery and emergency medicine. * Yes but we'll have ...
ClinicOmics
Departments of Biomedical Informatics Biostatistics Present Omics Data Clinic Notes and Analyses Journal Club Design and Analysis of Experiments Involving ...
Clinics
Biostatistics Clinics Monday Friday Noon 1:15pm Biostatistics Clinics are a free service staffed by the Department of Biostatistics open to all members of the Vanderbilt ...
ComplexDataJournalClub
Journal Club for Analysis of Complex Datasets Sebastiani et al, Nature Genetics 37:435;2005: Genetic dissection and prognostic modeling of overt stroke in sickle ...
ComputingClinic
Computing Clinic The Computing Clinic is currently on an extended hiatus (as of 12/2013) while the department's administration structure is being reorganized. We ...
CourseBios312
BIOS 312: Modern Regression Analysis (Spring 2013) Instructor * Chris Slaughter, DrPH, Assistant Professor of Biostatistics * james.c.slaughter 'at' vanderbilt ...
CourseBios323
Bios 7323: Applied Survival Analysis Summary: This is an introductory course in the analysis of time to event data where censoring and truncation may be present. Upon ...
CourseBios330
BIOS 330: Regression Modeling Strategies Frank E. Harrell, Jr.31 f.harrell@vanderbilt.edu Professor of Biostatistics Department of Biostatistics Vanderbilt University ...
CourseBios352
Statistical Collaboration Health Sciences II Instructors MarioDavidson Course Number 2014.01.SPR.GS.BIOS.352 Meeting Times Monday 1:00pm 3:00pm ...
DalesReproducibilityNotes
Reproducibility and Repeatability Reproducibility Reproducibility is the ability of an entire experiment or study to be duplicated, either by the same researcher ...
DanielByrne
Daniel W. Byrne Senior Associate in Biostatistics Director of Quality Improvement and Program Evaluation E mail: daniel.byrne@vanderbilt.eduPhone: 615.322.4228Fax ...
DataAssumptions
1 A subject is assumed to violate Inc/Exc Criteria if sas$elig$crtno, sas$elig$crtty are not missing and sas$elig$encexok is N. A subject is assumed not to violate ...
DataCleaningTips
Data Cleaning and Analysis Tips Statisticians are the last bastion against publishing research based on specious numbers. It's up to us to catch bad data when it ...
DataTransmissionProcedures
Procedures for Preparing Datasets for Analysis and for Transmission to the Department of Biostatistics Data Sharing Data must be in a rectangular format with one ...
DavidBrowning
This is your own TWiki User page. Edit the template as you see fit. Your Name, PhDYour TitleOther Duties a picture could go here E mail: your.address ...
DeBaun
Main.BenSaville 03 May 2011 Collaboration with Dr. Michael DeBaun * Wenli Action List * Meeting notes Requested (no meeting yet) Active (already had meeting ...
DeBaunMeetings
Main.BenSaville 12 Aug 2011 Table of Contents 22Aug 2011, Dale, Jeremy, Wenli, Ben * We discussed bringing all SAC I data to Vanderbilt and processing all future ...
DebashisGhoshNov16
Department of Biostatistics Seminar/Workshop Series Genomic data integration across several studies: An overview Debashis Ghosh, PhD Professor of Statistics and ...
DeptNewsSept2012
Biostatistics Faculty Meeting Date: September 5, 2012 Time: 3 PM Location: MCN C 2303 (Pathology Conference Room) Meeting Guest: Jeffrey R Balser, Vice Chancellor ...
DeptReminders
Reminders for Department Faculty and Staff Effort Reporting 1 At all times know the sources of your salary support and the percent efforts from each source. You ...
Design
The Design Package The Design package is now obsolete. R users must use the rms package instead * Overview of the Design Library * Online Help Documentation ...
DesignSurvivalAnalysis
Survival analysis with the survival and Design packages The following are some examples of how to perform survival analysis using the survival and Design packages ...
DianaMarver
This is your own TWiki User page. Edit the template as you see fit. Your Name, PhDYour TitleOther Duties a picture could go here E mail: your.address ...
DiffTimePoint
Susan Study * Start Date: 09 Sep 2004 * Research Drive Directory: Kasper/040603/ * Data Type: MassSpec * Notes: * Status: 1 normal: 100% complete ...
DynamitePlots
Dynamite Plots More * The height of a bar indicates the mean, and the vertical line on top of it represents the standard deviation (or standard error). ...
EdselPena
Department of Biostatistics Seminar/Workshop Series Multiple Decision Making in the Face of Uncertainty Edsel A. Peņa, PhD Professor, Department of Statistics, ...
Epi323Data
Epi 323: Design and Analysis with Time to Event Data (Spring 2016) Instructor * Chris Slaughter, DrPH, Associate Professor of Biostatistics Main Course Web Page ...
ExcelProblems
Problems with Excel * Patrick Burns' Spreadsheet Addiction page for general and computational problems with spreadsheets * Problems using Excel for Statistics ...
FHarrell29Sep10
Department of Biostatistics Seminar/Workshop Series Towards a More Rigorous Approach to Personalized Medicine Frank E Harrell Jr Professor and Chair, Department ...
FacRetreat
Faculty Retreat 2015 11 13Department of Biostatistics2525 West End Avenue Archive Used during retreat: https://public.etherpad mozilla.org/p/VbiostatRetreat Vision ...
FolderOrg
Recommendations for User Workstation Directory and E mail Folder Structure See also this It is important to organize your work in a very hierarchical tree so that ...
FrankHarrell
Frank E Harrell Jr, PhDProfessor of BiostatisticsFounding Chair E mail: f.harrell@vanderbilt.edu Phone: 615.322.2001 Fax: 615.343.4924Assistant: Ashlee ...
FumikoJune2005
Fumiko Study Data Preprocessing from Biostatistics Shared Resource Core * Start Date: 14 June 2005 * Research Drive Directory: /Taguchi/050304/Binning ...
GCRCNoonWorkshops
Handouts and Datasets
GenClinicAnalysisArchive
Recommendations, Analyses, and Data for Health Services Research, Diagnosis, and Prognosis Clinic Archive Current Notes 23Dec13 Heidi Silver, Director, Vanderbilt ...
GeneralWfccmDesign
General WFCCM Design * Wfccm Bug Reports Goals * Version 1 * Generate Scores. * Write basic graphs. * Version 2 * Add Permuatation ...
GermanBreastCa
German Breast Cancer Dataset This dataset is courtesy of Patrick Royston and Willi Saurbrei. It is the official version of a dataset from the website for their book ...
GrantPolicies
Policies and Procedures for Grant Proposals Biostatisticians in the Department of Biostatistics participate in grant development in various ways including: * assisting ...
HakmookKang092116
Department of Biostatistics Seminar/Workshop Series A Bayesian Double Fusion Spatio Temporal Model for Resting State Brain Connectivity Using Joing Functional And ...
HandoutsBioRes
Handouts and Reference Material on Biostatistics and Clinical Trials for Clinicians and Biomedical Researchers * General statistical ideas * Clinical trials ...
HighD09Jun05
Section 1 In the first section, we talked about Fumiko's and Take's data sets. Section 2 The mass spectra calibration problem is discussed, and on Friday Shuo Chen ...
HowToPagesList
How To Pages on the Biostatistics Wiki We are quickly building a lot of useful how to pages on our site. This page should help you find the pages you need quickly ...
HumanSubjectsSection
Grants, Human and Non Human Subjects, and the IRB This page is designed to provide guidance for Biostatistics faculty members who are submitting grant applications ...
I3Notes
Reported PSA Data from I3Research Old data: eclin.15FEB.xls, exported using OpenOffice as I3a.csv New data: TL.15FEB05.xls, exported using OpenOffice as I3b.csv ...
ITTeamSkills
Department of Biostatistics IT Team Skills and Experience The Department of Biostatistics boasts a strong IT support team consisting of 7 programmers and analysts ...
IntroBiostatCourse2006
IGP 304: Statistics for Biomedical Research Instructor: Chun Li, Ph.D. (chun.li #64;vanderbilt.edu; 515D Light Hall; 322 2884) Assistant: David Reif (david ...
IntroBiostatCourse2006StataLab
IGP 304: Stata Labs Some words from the instructor Knowing the software is vital to your learning of statistics and your course performance. If you learn statistics ...
IntroBiostatCourse2006StudentQuestions
Students' Datasets #RyanQuestion060113 Ryan's question on dichotomization (01/13/2006) Ryan asked this question: Here's something that sounds trivial, but I think ...
IntroBiostatCourse2007
IGP 304: Statistics for Biomedical Research (Spring 2007) Instructors: Chun Li, Ph.D. (chun.li #64;vanderbilt.edu; 515D Light Hall; 322 2884) Leena Choi, Ph.D. (leena ...
IntroBiostatCourse2007StataLab
IGP 304: Stata Labs Some words from the instructor Knowing the software is vital to your learning of statistics and your course performance. If you learn statistics ...
IntroBiostatCourseBlog
Chun's course blog Beginning words: Blogging is totally new to me. I try to experiment this so that I can help you understand the course and statistics in general ...
IntroBiostatDisc
Statistics for Biomedical Research Discussion Board Go to WelcomeGuest to learn about twiki. You will see a place to click to go to the TWikiRegistration page to ...
IntroBiostatFinalOptions
Options for Final Exam Option 1 * In class (Monday, 4/28, 3PM) * Short answer * Maybe some multiple choice and/or True False * Given analysis results ...
JStareNov11
Department of Biostatistics Seminar/Workshop Series Yet another measure of explained variation for survival models Janez Stare, PhD Institute of Biomedical Informatics ...
JayRussellSnoddy
Jay Snoddy Department of Biomedical Informatics (Started Nov 1, 2005) Contact Information * Email: j.snoddy #64;vanderbilt.edu * Phone Number: (to be determined ...
JeremyStephensOctober232013
Department of Biostatistics Seminar/Workshop Series Wrangling Data: Data Warehousing and Record Linkage Concepts Jeremy Stephens, B.S. Computer Systems Analyst ...
JimMalleyMay18
Department of Biostatistics Seminar/Workshop Series Probability Machines James D. Malley, PhD Center for Information Technology, National Institutes of Health, ...
JonathanMosley020817
Department of Biostatistics Seminar/Workshop Series Exploring BioVU, many SNPs and phenotypes at a time Jonathan Mosley, MD, PhD, Instructor of Medicine, Division ...
JustinBachmannAug232017
Department of Biostatistics Seminar/Workshop Series The Medicare Standard Analytic Files in Health Services Research Justin M. Bachmann, MD, Instructor in Medicine ...
KCReportChunLi
Summary of the collaboration plan activities with the Kenneday Center Chun Li Last update: January 26, 2009 Ongoing Projects: Dr. Jim Sutcliffe: I am a co investigator ...
LeeSeminarAug08
Department of Biostatistics Seminar/Workshop Series Statistical Bioinformatics in Translational Research: Personalized Chemotherapeutics using High throughput Expression ...
LeenaStataNotes
Stata Notes for Classes * Some of STATA codes for classes are listed. * EMS refers to Essential Medical Statistics. * Some of materials were copied/modified ...
LieblerJuly2005
Daniel Liebler * Start Date: 14 June 2005 * Research Drive Directory: /Liebler/050705 * Data Type: unknown * Notes * resluts of Chi Square are ...
LinuxWorkshops
Linux Workshops NOTE The Linux Workshops are no longer being presented. This page is being retained so that we can remember the links to the materials used in previous ...
LisaKaltenbach
Lisa Kaltenbach, MS lisa.kaltenbach@vanderbilt.edu * CV.pdf: My CV * metalica.dta: Metalica Dataset
LuisLitonjua
This is your own TWiki User page. Edit the template as you see fit. Your Name, PhDYour TitleOther Duties a picture could go here E mail: your.address ...
MCBSPharmacoepi
Pharmacoepidemiology in Masters of Clinical Biomedical Science Program * Instructor: Patrick G. Arbogast, Ph.D * E mail: patrick.arbogast #64;vanderbilt.edu ...
MPHBiostatIyear2006
Biostatistics I Year 2006 * Instructor: * Date: * Time: * Class Room: Materials for Regular Lectures * Syllabus: * Data sets * Lecture ...
ManyDataFrames
Examples of Dealing with Multiple Data Frames Stored in a List Common Application: Used sasxport.get to import multiple SAS datasets into one S list object a a ...
MarianthiMarkatouNov012016
Department of Biostatistics Seminar/Workshop Series A Semi parametric Method for Clustering Mixed Data Marianthi Markatou, PhD, Associate Chair for Research and ...
MatchingInAnObservationalStudyDemo
nbpMatching Demo: Matching In An Observational Study The following tutorial shows the R code to create matched sets using the package nbpMatching, an R package that ...
MattsEmailsOnConcomitantMedications
The PRDRUG data (CRF page 3) represent NSAIDS/selenium/vitamin E that were taken within 12 months prior to visit 1 but stopped prior to visit 1; the DRUG data represents ...
McbsBiostat12006
Biostatistics I Year 2007 * Instructor: Ayumi Shintani, Ph.D, MPH, Office S 2323 MCN, Phone: (615) 936 1954, E mail: Ayumi.shintani #64;mcmail.vanderbilt.edu ...
McbsBiostat12009
Biostatistics I Year 2009 * Instructor: Ayumi Shintani, Ph.D, MPH, Office S 2323 MCN, Phone: (615) 936 1954, E mail: Ayumi.shintani #64;mcmail.vanderbilt.edu ...
MichaelSchemperApr6
Department of Biostatistics Seminar/Workshop Series The estimation of average hazard ratios by Mantel Haenszel estimators and by Cox regression Michael Schemper ...
MsciBiostatII
.foswikiTopic { max width: 650px; } MSCI Biostatistics II February 2017 Key Persons Name Contact Office Hours Instructors: Frank E. Harrell, Jr ...
MsciBiostatIIAssignments
GRADES #instructions{ max width: 500px; margin: auto; padding top: .5ex; padding bottom: 1ex; padding left: 1em; } #overview{ max width: 500px ...
MsciBiostatIIDatasets
Whitlock and Schluter Datasets LABEL TITLE URL 02 e 2a Deaths from tigers http://whitlockschluter.zoology.ubc.ca/wp content/data/chapter02/chap02e2aDeathsFromTigers ...
MsciBiostatIISchedule
MSCI Biostatistics II Course Schedule February 2016 ul{ margin: 0; } Key: A = Whitlock and Schluter (text) B = Biostatistics for Biomedical Research (handout) H ...
MsciMiscellaneous2007
Chat Room for Q and A * The followings are from year 2006 Q1 In discussing the homework with some members of our group, we have noticed that there is something ...
NeuReport
Grant Proposals 1 Dr Lori Jordan (11/14) Ischemic Brian Injury and Cognitive Impairment in Adolescents and Young Adults with Congenital Heart Disease 1 Dr Kanika ...
NhanesGh
Body Size, Glycohemoglobin, and Demographics from NHANES 2009 2010 National Health and Nutrition Examination Survey * http://www.cdc.gov/nchs/nhanes/nhanes2009 ...
OmicsClinicAnalyses
Omics Data Clinic Notes and Analyses 21 February, 2017 Joshua Beckman I am a translational researcher who now has metabolomic data. This is a flux study wherein ...
PSBWeeklyReprotMay1305
This report is written on May,20 Binning improvement project: Programming part: I continued test step and finished short term goal. Research part: 1. We discussed ...
Patel07
Department of Biostatistics Seminar/Workshop Series Determining Significant Functional Connectivity of the Human Brain with fMRI and Wavelets Rajan Patel, PhD, ...
PauletteTempro
This is your own TWiki User page. Edit the template as you see fit. Your Name, PhDYour TitleOther Duties a picture could go here E mail: your.address ...
PcosStudy
PCOS Prostate Cancer Outcomes Study * Met on July 8, 2013 with Frank Fan. Purpose was for Frank to explain to us the data, its location, and his data manipulation ...
PedsGroup
Main.BenSaville 06 Nov 2009 Dept. of Pediatrics Collaborations, Ben Saville, Ph.D., Meng Xu, M.S. This page documents the activity of the collaboration plan between ...
PedsGroupActions
Main.BenSaville 06 Nov 2009 Actionable Items * Jackie Shopluck: additional analysis for Dex paper * John Soslow: manuscript review for TOF paper * Charles ...
PengchengLuRScript
My Sample R Script of Batch Preprocessing Two color cDNA Microarray Data slide.data.profile=function(datapath){ setwd(datapath) # datapath is the name of the directory ...
PhilipCrooke
This is your own TWiki User page. Edit the template as you see fit. Your Name, PhDYour TitleOther Duties a picture could go here E mail: your.address ...
PleuraEffusion
Pleural Fluid MALDI Study * Start Date: 11 Jan 2005 * Research Drive Directory: /Massion/050111 * Data Type: MassSpec * Notes: re analyse based on re ...
PlottingModelResults
Plotting linear model results Often times, you would like to generate graphics based on a model you fit in R. These plots may include a number of diagnostic plots ...
PostBaselineBiopsies
Post baseline biopsies 1 It would be best to report out two summaries for each pathological endpoint. One would include only the Central review data (i.e., data ...
PrePostStudy
Pre Post Treatment Study * Start Date: 16 Nov 2004 * Research Drive Directory: /Taguchi/041112/ * Data Type: MassSpec * Notes: 4 spectra of same patient ...
ProtLevels
Levels of Protection Policy (draft) Define 5 categories of data that require increasingly strigent protection mechanisms: Level Description Access allowed ...
ProtectingYourData
Protecting Your Data Introduction Certain kinds of information should be kept private. It is the responsibility of those of us who deal with this information to understand ...
Puzzler2
Binary Response, Random Sample of 1000 Patients from the SUPPORT Study, Missing Data Analyze the support dataset available at http://biostat.mc.vanderbilt.edu/twiki ...
Puzzler3
Sudden Death Associated with Treatment for Hypertension Original Article Zipped SPSS Save File FrankHarrell's Critique of the Article Analyze the MRC dataset ...
QC
QC Study * Start Date: 14 Jan 2005 * Research Drive Directory: /Kikuchi/050113 * Data Type: MassSpec * Notes: survival time is in month * Status ...
QingxiaChen
Qingxia (Cindy) Chen, PhD Associate Professor of Biostatistics Associate Professor of Biomedical Informatics E mail: cindy dot chen at vanderbilt.eduPhone ...
RCTGraphics
Graphics for Clinical Trials Frank E Harrell JrVanderbilt Department of BiostatisticsOffice of Biostatistics FDA CDER DIA/FDA Statistics Forum, North Bethesda MD ...
RClinicHelpfulRCode4
How to write your own functions and good R programing techniques Good R Programing Techniques R is quite different from regular programing languages in the way that ...
RGraphicsplsmo
Using the Hmisc plsmo Function for Plotting Nonparametric loess Trend lines R Clinic 23Oct08 The following examples use a new Titanic passenger and group survival ...
RMSscRatings
June 4 6 2001 1=disagree 5=agree * The course met the objectives advertised on Insightful's websight and flyers * 5: 5/9 4: 4/9 * has provided me with ...
RS
R Packages, Functions, and Documentation * R home R reference card R Programming Help files with output R Tutorials Videos R site search R seek ...
RSDatasetRetrieval
Methods of Retrieving Datasets Most of the datasets on this site are in the S dumpdata format (file suffix of .sdd) and R compressed save() file format (suffix of ...
RafeDonahue
Rafe Michael Joseph Donahue, PhD Adjunct Associate Professor Department of Biostatistics E mail: rafe.donahue@vanderbilt.edu Bivariate Baseball Score Plots ...
RaniLewis
This is your own TWiki User page. Edit the template as you see fit. Your Name, PhDYour TitleOther Duties a picture could go here E mail: your.address ...
RecordLinkagewithCoupler
Department of Biostatistics Seminar/Workshop Series Record Linkage with Coupler Jeremy Stephens, BS Computer Systems Analyst II, Department of Biostatistics, Vanderbilt ...
RegModelingBackCover
Many texts are excellent sources of knowledge about individual statistical tools (general linear models, survival analysis, missing data, etc.), but the art of data ...
RelativeToAbsoluteRisks
ABSRISK: Absolute Relative Risk by William D. Dupont and Walton D. Plummer, Jr. absrisk.exe is a program for estimating absolute risks from relative risks. This ...
RetiredTopics
Department of Biostatistics Vanderbilt University School of Medicine The Department * Goals and Vision * Department Pillar Goals * Operations * Reminders ...
RetreatProteomicsReport
Proteomics Summary of breakout discussion 17 Jan 2005 Participants: Billheimer (scribe), Chen, Koyama, M. Li, Shyr 1. What is the best way to collaborate with basic ...
RetrievalDatasets
Methods of Retrieving Datasets Most of the datasets on this site are in the S dumpdata format (file suffix of .sdd) and R compressed save() file format (suffix of ...
ReviewTepel04
Review of Tepel et al, NEJM 2000;343:180 4 Biostatistical Reviewer: FrankHarrell This paper demonstrates that even in a premier journal, statistical reviews are frequently ...
RmS
REGRESSION MODELING STRATEGIES Course Software Course Notes With Applications to Linear Models, Logistic and Ordinal Regression, and Survival Analysis Information ...
RmS2Plans
Changes and Additions Planned for the Second Edition of Regression Modeling Strategies * Add many new references published from 2001 2007 * Add information on ...
Rms2Errata
Errata for First Printing (Sept. 2015) of Regression Modeling Strategies, 2nd Edition For replacements for R code that no longer works due to changes in the R system ...
RmsGenDisc
General Modeling Issues Discussion Board What to Do with a Dataset that is Too Small? John Fieberg (John.Fieberg #64;dnr.state.mn.us) asked the following on 2 Mar ...
Rrms
The rms Package for R : Regression Modeling Strategies Documentation CRAN * Massive update for version 5.0 0 including interactive plotly graphics and advanced ...
SASexportHowto
How to export data from SAS and import to R Here are a few ways to get data from SAS to R with a focus on preserving metadata (labels and formats/factor levels). ...
SAStoR
This should be merged with the existing wiki page SASexportHowto. A Way to Import SAS Data to R With All the Formats and Labels If you have a SAS .sas7bdat file with ...
SanderQCSept2005
Sander QC * Start Date: Sept. 9th 2005 * Research Drive Directory: Z:\A_HDDAdata\datafile2005\Sander\072505\QC * Data Type: Mass Spectra * Notes ...
SccAnalyses
SCC Analyses Email, digital folders, and physical folders have proven to be an inefficient long term solution for managing multiple analysis results for many datasets ...
SdataManip
Data Manipulation and Stratification in R: Examples and Tricks Preparing Data for Analysis * R requivalent to SAS for transposing and reshaping datasets * A ...
StaffBiostatisticianJobDescriptions
Staff Biostatistician Job Descriptions Biostatistician I Biostatistician I is an exempt staff position. Responsibilities of a Biostatistician I will vary based on ...
StatBiomedRes
IGP 304: Statistics for Biomedical Research (Spring 2010) Instructors * Frank Harrell PhD, Professor of Biostatistics, Chairman, Dept. of Biostatistics ...
StatBiomedResHWd
Homework 4 Work the following problems in Rosner. State the statistical method you used for each calculation, and provide the necessary results. 1 6.33 1 6 ...
StatBiomedResProject
IGP 304 Analysis Project Purpose We are requiring an extra data analysis project for students who received an incomplete in the course to allow them to raise their ...
StatBiomedResRNotes
R Code and Examples from Class Introduction R is an powerful statistics package that is also capable of creating publication quality graphics. The experienced user ...
StatBiomedResSyllabus
IGP 304: Statistics for Biomedical Research Instructor: Frank Harrell Course page: http://biostat.mc.vanderbilt.edu/StatBiomedRes Course Goals 1 understand ...
StatCompCourse
Statistical Computing Course Statistical Computing Page * Computer programming prerequisites * Syllabus, course notes, and book by Alzola and Harrell. ...
StatCompGraph
This Page is Obsolete. It is replaced by StatCompCourse and StatGraphCourse Statistical Computing and Graphics * Computer programming prerequisites * Syllabus ...
StatCompGraphShortCourse
S for Statistical Data Analysis and Graphics Frank E. Harrell, Jr. (f.harrell@vanderbilt.edu) Professor of Biostatistics and Statistics Chair, Department of Biostatistics ...
StatCompServerInfo
statcomp2.vanderbilt.edu Information Description Statcomp2 is a 64 bit Linux server comprised of 2 Intel Xeon X5647 processors running at 2.93GHz, 96Gb of memory ...
StatModelBookDupont
Statistical Modeling for Biomedical Researchers This page provides the data sets that are used in Dupont, W. D. (2002). Statistical Modeling ...
StatModelBookDupontPreface
Preface The purpose of this text is to enable biomedical researchers to use a number of advanced statistical methods that have proven valuable in medical research ...
StatisticalComputingSeries
The Statistical Computing Series The Statistical Computing Series is a monthly event for learning various aspects of modern statistical computing from practitioners ...
StatisticalPolicy
Good Statistical Practice General * See our checklist Analysis File Sharing Sometimes a researcher requests a copy of analysis files we produce for long term ...
StefanConradySept7
Department of Biostatistics Seminar/Workshop Series Knowledge Discovery in Unknown Domains with Machine Learning and Bayesian Networks Stefan Conrady Managing Partner ...
StevenChenDec7
Department of Biostatistics Seminar/Workshop Series Sparse principal component analysis for pathway association testing Steven Chen, PhD Assistant Professor, Department ...
SupportDesc
SUPPORT Datasets Datasets Archived at ICPSR The support dataset is a random sample of 1000 patients from Phases I II of SUPPORT (Study to Understand Prognoses ...
SweaveTemplate
Sweave and knitr Templates NOTE: SUPERCEDED by knitr and LaTeX Styles knitrl and spaper; See GitHub rlatex Project Using LaTeX Style Sweavel /template3.pdf ...
TheresaScott
Theresa Scott's Teaching Material IMPORTANT: Theresa (Terri) Scott is no longer a Biostatistician with Department of Biostatistics at Vanderbilt University, but ...
TokaiBiostatII
Master in Clinical Biomedical Science Biostatistics II Year 2007 * Instructor: Ayumi Shintani, Ph.D, MPH, Office S 2323 MCN, Phone: (615) 936 1954, E mail: Ayumi ...
UserpageTemplate
This is an example of a user information page that can be used as a starting point. You can grab the code for this example, edit it however you like, and copy it ...
VICTRBiostatPolicies
New guidelines for VICTR biostat support application (effective September, 2017) * VICTR will no longer offer any $2000 vouchers. All biostatistics vouchers will ...
VKCArticles
Medical Citations for Statistical Issues From the Vanderbilt Kennedy Center Articles Database Category Keywords Author Year Title Notes URL Analysis ...
VKCPlans
Meeting 21Nov13 Present: Thornton Wells, Wang, Urbano,Tapp, Dietrich, Li Agenda: Discuss focus and organization of new 'Biostatistics and Bioinformatics Core' in U54 ...
VaPOEM
* Main.KristenKotter 20 Jul 2009 * log of some relevant Kristen Kotter POEM and other related VA Work with completion dates Actionable Items and date assigned ...
VaProjectManagementProtocols
VA Project Management Protocols The following protocols are to create standard system for managing data, scripts, documentation, etc. for VA projects on res10. Folder ...
ValerieMontgomeryRice
This is your own TWiki User page. Edit the template as you see fit. Your Name, PhDYour TitleOther Duties a picture could go here E mail: your.address ...
VisualPruner
Visual Pruner: Visually guided cohort selection for observational studies Thank you for your interest in Visual Pruner! The app is not suitable for use on small screens ...
WebHome
Department of Biostatistics Vanderbilt University School of Medicine The Department * Goals and Vision * Operations * Reminders * How To Pages * Meetings ...
WebStatistics2004
Statistics for Main Web in 2004 Current Web Statistics Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors ...
WebStatistics2005
Statistics for Main Web in 2005 Current Web Statistics Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors ...
WebStatistics2006
Statistics for Main Web in 2006 Current Web Statistics Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors ...
WebStatistics2007
Statistics for Main Web in 2007 Current Web Statistics Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors ...
WebStatistics2008
Statistics for Main Web (2008) Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads ...
WebStatistics2009
Statistics for Main Web (2009) Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads ...
WednesdayClinicNotes
Notes for Wednesday Biostatistics Clinic The Biostatistics Clinic on Wednesdays is dedicated to biostatistics applications in surgery, anesthesiology, and emergency ...
WednesdayClinicNotesArchive
Notes for Wednesday Biostatistics Clinic Archive Current Notes 2013 December 11 Catherine Bulka, Anesthesiology * Wants to demonstrate/examine group balance ...
WednesdaySeminarSeries
The department hosts weekly seminars and workshops for persons interested in applied statistics, statistical theory, epidemiology, health services research, clinical ...
Wfccm2Guide
WFCCM 2 How To Step by step Step 1: Loading the Data and Information Sets * Go to "File Add a Data Set" to add the given data * The name of the Data ...
Wfccm2Testing
red content are potential problems are found * Purpose : testing WFCCM2 regularly to ensure that problems are found and dealt with. * Methods * functional ...
WfccmAlgorithmFDR
False Discovery Rate Algorithm Calculate adjusted p values using False Discovery Rate Controlling Procedures. FDR Algorithm predefined values: subSize of data ...
WfccmBugReport20060320132452
The Info Score There are two datasets. One is the whole dataset which includes all the samples, and the other only includes the samples I need. I use the same grouping ...
WfccmBugReport20060519100152
Cannot write missed column report Steps to Reproduce Get the data from Bashar and run the same comparisons. Expected Behavior Observed Behavior Application threw ...
WfccmBugReports
Bug Reports Create Bug Report Bug Name Version User Date Outstanding View/edit Name Version Reported Date ** ...
WfccmClassDescriptions
Interface descriptions * IDataSet Interface for datasets. Class descriptions * DataContainer Parent class for the data classes * InformationSet ...
WfccmCrossValidation
Cross Validation TODO * Refactor Distance calculation. * Swap loops so the cross validation (kFold) loop is inside the TopNManager (c) loop. * ...
WfccmDataContainer
DataContainer Public Methods * DataContainer(DataContainer) Copy constructer. * AddColumn(string) Appends a new column of data, sets the name, and returns ...
WfccmDataSet
DataSet Parent: DataContainer, Interface: IDataSet Public Methods * DataSet(DataSet) Copy Constructor overload that handles the name list. * SetDataPoint ...
WfccmDesignWorkArea
Survival Design 1 create timediff variable from date of diagnosis to date of death in days. 1 Clean the data by changing the log 10 data from continous data ...
WfccmDistance
Distance Public Methods * DistanceResult DoDistance(DataSet, DataGrouping, FilteredScore) Runs distance on the provided traning dataset. * DistanceResult ...
WfccmDistributedComputing
Distributed Computing Detailed Time Line and Tasks Network Specification May 23 Jun 03 2 week 1. Create specification and place on wiki. Network Design Jun 06 ...
WfccmFunctionalityRequestsAndChanges
Functionality Requests * Change T test p value calculation from equal variance to unequal variance. * Eisen like data overview with sortable columns and groupings ...
WfccmLargeDataSetCapability
Large Data Set Capability Detailed Time Line and Tasks Large DataSet Implementaiton Apr18 May 06 3 weeks 1. Implement objects. 1. Build the interface. ...
WfccmLimitedPublicVersion
Add Limitations to public versions * No Cross Validation * No Permutation P Value * No KS * No Hu Wright * No Sam * No Access to quality control ...
WfccmPrePostHowto
WFCCM Pre Post Guide This is a guide for running pre post analysis in WFCCM. For a pre post analysis, there needs to be a pre treatment and post treatment sample for ...
WfccmQualitycontrol
QualityControl Private Methods * GenerateAgreement_NoGp (DoubleProgress, DataSet, string, string) * GenerateAgreement_InGp (DoubleProgress, DataSet, DataGrouping ...
WfccmRequirements
Requirements Statement The software to be designed will control the generation of scores to be used is the distance analysis of genes and proteins via WFCCM. The program ...
WithdrawalFromTreatmentOrStudy
Data Sources TMTDISC:(CRF: Running LogsTFcompliantversion4.pdf, p.98 (p.26 in pdf)) * INPERSP: Was the investigational product stopped permanently before the end ...
YanGuoNov182015
Department of Biostatistics Seminar/Workshop Series Using a Global Heterozygosity Measure for Phenotype Association Studies Yan Guo, PhD Assistant Professor Department ...
YaominXuFebruary262014
Department of Biostatistics Seminar/Workshop Series De novo Identification of differential epigenomic events in next gen sequencing studies Yaomin Xu, PhD Research ...
Number of topics: 223
 
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