Take Study

• Start Date: June 30, 2005
• Research Drive Directory: \kikuchi\063005HJ
• Data Type: Mass Spectra

Data information

• Training data: Cornell
  • Total Features (rows): 502, 563(together), 221(AUC,forceBin), 219(AUC, togetherBin)
  • Total Spectra (cols): 338
    • normal group: 55 spectra of 19 patients
    • tumor group: 283 spectra of 81 patients
    • In tumor group
      • Adenocarcinoma group: 220 spectra of 62 patients
      • Squamous cell group: 52 spectra of 15 patients
    • In tumor group
      • N0 group: 153 spectra of 43 patients
      • N1&N2 group: 130 spectra of 38 patients
• Testing data: Motiff
  • Total Features (rows): 502, 563(together), 221(AUC,forceBin), 219(AUC, togetherBin)
  • Total Spectra (cols): 373
• Original Data: \kikuchi\063005HJ\data_bashar

Output

• Score Summary, Top 100, Cluster: \kikuchi\063005HJ\delivery

Analysis Requests

• Training & Testing
• Overall & Average
  • For Training Data, averaged by patient_id
  • For Testing Data, averaged by idnum
• Group Info
  • Normal vs Tumor
  • In Tumor Group, Adeno vs Squam
  • In Tumor Group, N0 vs N1&N2
  • All Testing Data are in Tumor, Adeno, and N0 Group