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CollaborationAssignments
Health Services Research (Center for) Russell Rothman, MD, MPP
^ ^ Working with Wes Ely, MD, PhD: Rameela Chandrasekhar, PhD Jennifer Thompson, MS
^ ^ Working with Wes Ely, MD, PhD: Rameela Chandrasekhar, PhD Jennifer Thompson, MPH
^ ^ General: Laurie Samuels, PhD N/A
r113 - 23 Apr 2018 - 15:14 by !JenniferThompson
CourseBios6321Spring2018
4/19/18 Meta analysis Homework 9 due
16 4/24/18 Final exam due (tentative)
16 4/24/18 Final exam due
4/26/18
r19 - 23 Apr 2018 - 08:50 by !TatsukiKoyama
CoffeewiththeChair
Coffee with the Chair
Starting in May, Dr. Shyr would like to host weekly office hours to give faculty, staff and students a time to visit over coffee (or tea). Feel free to sign up
Starting in May, Dr. Shyr would like to host weekly office hours to give faculty, staff and students a time to visit over coffee (or tea). Feel free to sign up
If you have any questions, please feel free to reach out to Jill Shell at jillanne.k.shell #64;vumc.org.
5.
Thursday, June 7 9:00am 10:00am 1. Dr. Shyr's PRB Office, 576 PRB
r10 - 20 Apr 2018 - 13:02 by !JillShell
DisclaimStmt
%META:TOPICPARENT{name="FacMtg14Apr10"}%
The following is simply a reminder of continuing NIH and NICHD policies about acknowledging support.
The following is simply a reminder of continuing NIH and NICHD policies about acknowledging support.
Thanks for observing these policies.
Acknowledging VKC Research Support
Acknowledging VKC Research Support and NIH Disclaimer Statement
r2 - 20 Apr 2018 - 11:00 by !HakmookKang
CourseBios362
Wed. 4/18 HTF 14.8 none Multidimensional scaling lecture 30.pdf
Fri. 4/20 none none Review for final exam; last lecture
Homework/Laboratory (other than problems listed in HTF)
r217 - 20 Apr 2018 - 09:17 by !MattShotwell
CourseBios330
Assignments 2018 04 05 Assignment 9
NEW Solutions 2018 04 17 Assignment 7, 8
NEW Solutions 2018 04 20 Assignment 9 Problem 6
Solution knitr source
r185 - 20 Apr 2018 - 07:46 by !FrankHarrell
ChrisSlaughter
Published Papers
1 Krill J, DaVee T, Yachmiski P, Slaughter JC and others. Risk of Post Endoscopic Retrograde Cholangiopancreatography Pancreatitis Following Double Guidewire
1 Herington JL, O'Brien C, Robuck MF, Lei W, Brown N, Slaughter JC, Paria BC, Mahadevan Jansen A, Reese J. Prostaglandin endoperoxide synthase 1 (Ptgs1) medi
r168 - 19 Apr 2018 - 16:51 by !ChrisSlaughter
WebHome
* Author Checklist
* CQS/Biostat Summer Institute flyer
Collaboration
ga('send', 'pageview');
* 2018_CQS_SI_Flyer.pdf: 2018_CQS_SI_Flyer.pdf

r179 - 19 Apr 2018 - 15:58 by !DalePlummer
GenClinicAnalyses


2018 04 23
James Andry, Neurology Sleep


* Please provide a short description of your project and the questions you’d like to address: The primary goal of this study is to evaluate whether the featur
r476 - 19 Apr 2018 - 14:09 by !KimHart
ClinicAnalyses

2018 May 3
Vickie Hannig
* Our project utilizes a 24 question validated survey with a 7 point Lickert scale, completed by the patient before and after a genetic counseling visit to as
* Data collection Survey.
* Expected outcome: Protocol with no expected funding support, VICTR Biostatistics voucher, Abstract, Other
r517 - 19 Apr 2018 - 14:05 by !KimHart
RmS
* NEW Jan de Leeuw's excellent working paper on splines, including monotone splines
* NEWComparison of pseudo R^2
* Statistical Computing home page
* Teaching Material
FrankHarrell 30 Jan 2004; updated 29 Feb, 4,27 May, 4, 11 Jul, 29 Aug, 2 Sep 2004, 20, 22 Jan, 24 Mar, 14 Aug 2005, 13 Jan, 11 Nov 2006, 28 Feb, 29 Jun,
FrankHarrell 30 Jan 2004; updated 29 Feb, 4,27 May, 4, 11 Jul, 29 Aug, 2 Sep 2004, 20, 22 Jan, 24 Mar, 14 Aug 2005, 13 Jan, 11 Nov 2006, 28 Feb, 29 Jun,
r219 - 19 Apr 2018 - 13:16 by !FrankHarrell
JenkinsEMCode
Yiadom MYAB, Mumma BE, Baugh CW, Patterson B, Mills AM, Salazar G, Tanski M, Jenkins CA, Vogus TJ, Miller KF, Lehmann CU, Wang, TJ, Collins SP, Dittus RS, Bern
Yiadom MYAB, Olubowale OO, Jenkins CA, Miller KF, West JL, Jackson BE, Vogus TJ, Lehmann CU, Antonello VD, Wang TJ, Dittus RS, Bernard GR, Collins SP, Storrow


CathyJenkins 23 Oct 2017
NEW - 19 Apr 2018 - 10:47 by !CathyJenkins
WednesdaySeminarSeries
May 9
May 16 Summer semester
May 16
May 23 Summer semester
May 23 TBD Gustavo Amorim
May 30 Summer semester
r355 - 18 Apr 2018 - 14:53 by !ThomasStewart
LipingDU
Main.LipingDU LipingDU
NEW - 18 Apr 2018 - 09:07 by !RegistrationAgent
WikiUsers
* LingjunFu LingjunFu 24 Aug 2015
* LipingDU LipingDU 18 Apr 2018
* LipingDu LipingDu 13 Jan 2012
r306 - 18 Apr 2018 - 09:07 by !AdminUser
ContinuingEdu
* February 16th. Dr. Robert Greevy. Title: Why aren't we all taking metformin to prevent cancer? A lesson in HSR study design
* April 20th. Dr. Thomas Stewart. Title: TBD
* April 20th. Dr. Thomas Stewart. Title: Customizing the look of your R Markdown reports
* May 18th. Dr. Hakmook Kang. Title: TBD
r5 - 17 Apr 2018 - 14:39 by !RunFan
SheauChiann
Main.SheauChiann SheauChiann
NEW - 17 Apr 2018 - 14:18 by !RegistrationAgent
TatsukiRcode
1 "mediumorchid3"
Sort a matrix or a dataframe


sort.mat3 = length(decreasing)


v
r6 - 17 Apr 2018 - 12:37 by !TatsukiKoyama
WednesdayClinicNotes
2018 April 18
Luis Huerta, Pulmonary/Critical Care
* "I am attempting to validate an electronic severity of illness calculator (SOFA score) versus the gold standard of manual chart review. There are 6 componen
2018 April 18
James Zhang, Surgery
r590 - 17 Apr 2018 - 11:50 by !KimHart
MattShotwell
* Onwuegbuzie AJ, Leech NL (2004) Post Hoc Power: A Concept Whose Time Has Come. Understanding Statistics 3:201 230.
Crossover studies
* Method: https://www.ncbi.nlm.nih.gov/pubmed/6689736
* Reporting: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2683810/

r39 - 17 Apr 2018 - 11:17 by !MattShotwell
CourseCausalInference
Feb 15 Mediation Analyses VanderWeele TJ (2015). Explanation in Causal Inference: Methods for Mediation and Interaction. Chapter 2, sections 2.1 2.6, 2.1
Feb 20 Mediation Analyses VanderWeele TJ (2015). Explanation in Causal Inference: Methods for Mediation and Interaction. Chapter 3, sections 3.2 3.4; Cha
Feb 20 Mediation Analyses VanderWeele TJ (2015). Explanation in Causal Inference: Methods for Mediation and Interaction. Chapter 3, sections 3.2 3.4; Cha
Feb 22 Compliance Angrist JD, Imbens GW, Rubin DB (1996). Identification of causal effects using instrumental variables. JASA 91:444 455 Lecture11
Apr 5 Marginal structural models Daniel RM, Cousens SN, De Stavola BL, Kenward MG, Sterne JAC (2012). Methods for dealing with time dependent confounding
Apr 10 MSM Robins JM, Hernan MA, Brumback B (2000). Marginal structural models and causal inference in epidemiology. Epidemiology 11: 550 560. Hernan MA,
r32 - 17 Apr 2018 - 09:46 by !BryanShepherd
LaurieSamuels
%META:FILEATTACHMENT{name="Samuels__Lauren_photo.jpg" attachment="Samuels__Lauren_photo.jpg" attr="" comment="photo" date="1465507316" path="Samuels _Lauren_phot
%META:FILEATTACHMENT{name="LaurenRuthSamuelsCV.pdf" attachment="LaurenRuthSamuelsCV.pdf" attr="" comment="CV" date="1522670178" path="LaurenRuthSamuelsCV.pdf" si
%META:FILEATTACHMENT{name="LaurenRuthSamuelsCV.pdf" attachment="LaurenRuthSamuelsCV.pdf" attr="" comment="CV" date="1523973189" path="LaurenRuthSamuelsCV.pdf" si
r51 - 17 Apr 2018 - 08:53 by !LaurieSamuels
Cindy20Rush
Wednesday, April 18, 2018
Time Person/Event Location Breakfast at the hotel 8:50am Meet Kathryn in the hotel lobby Holiday Inn, Vanderbilt. Short walk to office. 9:00 9:30am
Time Person/Event Location Breakfast at the hotel 8:50am Meet Kathryn in the hotel lobby Holiday Inn, Vanderbilt. Short walk to office. 9:00 9:30am

Lunch:

r11 - 16 Apr 2018 - 17:48 by !ThomasStewart
StatisticalComputingSeries
23 March, 2018 Molly Olson
POSTPONED


Running R Scripts in Batch on Remote Servers


27 April, 2018 Cole Beck
r144 - 16 Apr 2018 - 15:15 by !ChrisFonnesbeck
SolarisR
10 Install all the dependencies for R by running this command as root (it will take a while):
pkgutil y i CSWalternatives CSWbash CSWbdb48 CSWcacertificates CSWcas etcservices CSWcas etcshells CSWcas migrateconf CSWcas preserveconf CSWcas texinfo CSWcom
pkgutil y i CSWalternatives CSWbash CSWbdb48 CSWcacertificates CSWcas etcservices CSWcas etcshells CSWcas migrateconf CSWcas preserveconf CSWcas texinfo CSWcom
Some of these are duplicate packages. I got this list from listing all of the packages I had installed using pkgutil l. You can optionally install the texliv
CC="cc xc99"
CFLAGS=' O xlibmieee'
r3 - 13 Apr 2018 - 17:20 by !JeremyStephens
BryanShepherd
Curriculum Vitae

* cv.pdf:
%META:FILEATTACHMENT{name="curricul.doc" attr="" comment="CV" date="1129923288" path="curricul.doc" size="43008" user="BryanShepherd" version="1.1"}%
* cv.pdf: CV (10/24/05)

r6 - 13 Apr 2018 - 15:30 by !BryanShepherd
RMSShortCourse2018
Vanderbilt Campus, Nashville, TN 37232
Registration
Registration (Please note registration will close on Monday, May 7th, 2018)
*Registration is now OPEN. Please follow this link: REGISTER NOW
Registration is now OPEN. Please follow this link: *REGISTER NOW
* Please email interest to Jill Shell ( jill.shell #64;vanderbilt.edu)
r5 - 12 Apr 2018 - 11:39 by !JillShell
CatContinuous
* Median split demo
FrankHarrell 27 Jun 2004, 21 Jun 2006, 25 Sep 2007, 7 Jan 2008, 15 Aug 2010, 16 Dec 2010, 13 Mar 2014, 7 Jul 2015, 18 Mar 2017, 8 Apr 2018
FrankHarrell 27 Jun 2004, 21 Jun 2006, 25 Sep 2007, 7 Jan 2008, 15 Aug 2010, 16 Dec 2010, 13 Mar 2014, 7 Jul 2015, 18 Mar 2017, 8 Apr 2018, 10 Apr 2018
r19 - 10 Apr 2018 - 11:19 by !FrankHarrell
Valerii20Fedorov
Time Event/Meeting Location 8:40 9:00am Kathryn will meet Dr. Fedorov in the lobby of the hotel, and escort to the office Courtyard Lobby, 1901 WEA
Matt Shotwell 2525 WEA 11118B 9:30 10:00 AM Ran Tao 2525 WEA, Suite 1130 10:00 10:30 AM Jonathan Schildcrout, PhDProfessor 2525 WEA 11117 10:30 11:00 AM F
Matt Shotwell 2525 WEA 11118B 9:30 10:00 AM Ran Tao 2525 WEA, Suite 1130 10:00 10:30 AM Jonathan Schildcrout, PhDProfessor 2525 WEA 11117 10:30 11:00 AM Fr
2.
2. 3. 1:15 PM Set up for talk 1:30 2:30 PM Present Biostatistics Seminar MRBIII Building Rm. 1220 2:45 PM Thomas Stewart Walk back to 2525 West End
r17 - 09 Apr 2018 - 14:07 by !ThomasStewart
JenniferThompson
Contact Information
* E mail: jennifer.l.thompson #64;vanderbilt.edu
* E mail: j.thompson #64;vumc.org
* Phone: 615.322.9301
r42 - 06 Apr 2018 - 11:19 by !JenniferThompson
ManuscriptChecklist
ALERT! Use of inappropriate measures of predictive accuracy
As described in detail here, using improper accuracy scoring rules to quantify predictive accuracy gives misleading results and often requires arbitrary dichotom
As described in detail here, using improper accuracy scoring rules to quantify predictive accuracy gives misleading results and often requires arbitrary dichotom
ALERT!Use of Imprecise Language Glossary
r45 - 06 Apr 2018 - 08:46 by !FrankHarrell
TatsukiKoyama
%META:TOPICPARENT{name="TWikiUsers"}%
Tatsuki Koyama, Ph.D.Assistant Professor of Biostatistics
Tatsuki Koyama, PhDAssistant Professor of Biostatistics
Email: tatsuki.koyama@vanderbilt.eduPhone: 615 936 1232Fax 615 936 2602Office: 580 Preston Research Building, Nashville, TN 37232 6848 Va
Email: tatsuki.koyama@vanderbilt.eduPhone: 615 936 1232Fax 615 936 2602 Vanderbilt University School of Medicine Department of Biostatistics
* Homepage : http://people.vanderbilt.edu/~tatsuki.koyama/
r7 - 05 Apr 2018 - 21:54 by !TatsukiKoyama
CourseBios330Syllabus
Cox Model Case Study (H20, L26)
Analysis of Covariance in Randomized Trials (BBR Chapter 12, L27)
Analysis of Covariance in Randomized Trials (BBR Chapter 13, L27)
Medical Diagnostic Research (L27, BBR Chapter 18, L28)
Medical Diagnostic Research (BBR Chapter 19, L28)
r48 - 04 Apr 2018 - 16:38 by !FrankHarrell
SemEmail
Primary List (Receives All Announcements)
biostat all #64;list.vanderbilt.edu; biostat secfac #64;list.vanderbilt.edu; biostat students #64;list.vanderbilt.edu; chun.li #64;vanderbilt.edu; david.airey #6
biostat all #64;list.vanderbilt.edu; biostat secfac #64;list.vanderbilt.edu; biostat students #64;list.vanderbilt.edu; chun.li #64;vanderbilt.edu; david.airey #6
List for sessions related to clinical trials
r232 - 04 Apr 2018 - 11:59 by !EvanSommer
EvanSommer
Main.EvanSommer EvanSommer
NEW - 04 Apr 2018 - 11:57 by !RegistrationAgent
RuthPfeiffer
DinnerApril, 3, 2018Time: 6:00pmRestaurant: 404 KitchenAttendees: Ruth Pfeiffer, Mitch Gail, Yu Shyr, Jon
LunchApril, 4, 2018Time: 11:30 1:00pmAttendees: Frank Harrell, Thomas Stewart
LunchApril, 4, 2018Time: 11:30 1:00pmAttendees: Frank Harrell, Thomas Stewart, Bob Johnson
SeminarApril, 4, 2018Time: 1:30 2:30pmLocation: MRBIII: Room 1220Title: "An efficient procedure to combine
r21 - 04 Apr 2018 - 08:18 by !BobJohnson
OmairKhan
%META:TOPICPARENT{name="WikiUsers"}%
Omair A. Khan, MAS, GStat Biostatistician IIASA Accredited Graduate Statistician
Omair A. Khan, MAS, GStatBiostatistician IIASA Accredited Graduate Statistician
Email: omair.a.khan #64;vanderbilt.edu Phone: 615.343.3921 Fax: 615.343.4924
e omair.a.khan #64;vumc.org p 615.343.3921 f 615.343.4924
Vanderbilt University Medical CenterDepartment of Biostatistics2525 West End Ave Ste 1100Nashville, TN 37203
r6 - 03 Apr 2018 - 09:19 by !OmairKhan
VisualPruner
Presentation from useR! 2016
Introductory article
Samuels, L. R., Greevy, R. A., Jr. (2018). Visual Pruner: Visually Guided Cohort Selection for Observational Studies. Observational Studies, 4, 150–170. https:


Github repository
r11 - 02 Apr 2018 - 06:59 by !LaurieSamuels
FHTools
* LaTeX: Composition and typesetting of complex documents where fine control is needed
* Rmarkdown with knitr and Rstudio for statistical reports, handouts, presentations
* Rmarkdown with knitr and Rstudio for reproducible statistical reports, handouts, presentations, using this template
* Linux: Operating system
* Second choice: Thunderbird with add ons nostalgy, Conversations, AttachmentExtractor
* knitr LaTeX R: Reproducible research and reporting framework
r8 - 29 Mar 2018 - 11:39 by !FrankHarrell
FrankHarrell
Frank E Harrell Jr, PhDProfessor of BiostatisticsFounding Chair
E mail: f.harrell@vanderbilt.edu Phone: 615.322.2001 Fax: 615.343.4924Assistant: Ashlee Bartley Vanderbilt University School of MedicineDepartment of
E mail: f.harrell@vanderbilt.edu Phone: 615.322.2001 Fax: 615.343.4924Assistant: Tawanna Peters Vanderbilt University School of MedicineDepartment of
Research Interests
r122 - 29 Mar 2018 - 11:35 by !FrankHarrell
BobMcClellan
Main.BobMcClellan BobMcClellan
NEW - 28 Mar 2018 - 12:05 by !RegistrationAgent
CharlesDupont
Computer Systems Analyst II
* Email: charles.dupont #64;vanderbilt.edu
* Email: charles.dupont #64;vumc.org
* Phone Number: (615) 936 6510
r50 - 28 Mar 2018 - 11:58 by !CharlesDupont
ShiHuang
Selected journal articles
Huang, S. , Bandiera, F,Prado, G., Longitudinal Relationship between Body Weight and Marijuana Use among Adolescents and Young Adults A Cross lagged panel anal
Huang, S. , Bandiera, F,Prado, G., Longitudinal Relationship between Body Weight and Marijuana Use among Adolescents and Young Adults A Cross lagged panel anal
Huang, S. , David MacKinnon, Perrino, T., and Hendricks Brown. An R Program for Synthesizing Mediation Analyses Across Multiple Trials.Statistical Methods and A
Huang, S., Trapido, E., Fleming, L., Arheart, K., Crandall, L., French, M., Malcolm, S., Prado, G. The Long term Effects of Childhood Maltreatment Experiences on
#############
r26 - 26 Mar 2018 - 16:32 by !ShiHuang
FacultyStaff
Amy Perkins , M.S. Biostatistician III Sep 2015 University of Pittsburgh
Kim Hart , M.A. Biostatistician III Mar 2018 Arizona State University
Jennifer Morse , M.S. Biostatistician II Sep 2015 Texas A M University
r99 - 26 Mar 2018 - 14:11 by !KimHart
KimHart
Main.KimHart KimHart
NEW - 26 Mar 2018 - 14:06 by !RegistrationAgent
ODSandLDA
Published Work (with Pubmed Central Links when available)
1 PMIDC{29542170}
1 PMIDC{29068840} link
1 Lee S. McDaniel Jonathan S. Schildcrout, and Paul J. Rathouz. Generalized linear models under biased sampling designs: A sequential offsetted regression app

1 Leila Zelnick, Jonathan S. Schildcrout, and Patrick J. Heagerty. Mixed Effects Models under Outcome Dependent Sampling Designs. (submitted).
r24 - 26 Mar 2018 - 09:17 by !JonathanSchildcrout

Topic attachments
I Attachment Action Size Date Who Comment
2018_CQS_SI_Flyer.pdfpdf 2018_CQS_SI_Flyer.pdf manage 214.5 K 19 Apr 2018 - 15:58 DalePlummer  
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