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EllieMurray26Feb2020Itinerary
Dinner
Attendees: 1. 2. 3.
Attendees: 1. Frank Harrell 2. 3.
Time: 6 pm Notes:
1:30 2:30pm Seminar Lecture MRB III Rm. 1220
2:45 3:15pm
r2 - 21 Feb 2020 - 06:51 by !FrankHarrell
CourseCausalInference
Mar 17 BRYAN OUT OF TOWN Causal Inference for Econometricians Guest Lecture by Pedro Santanna
Mar 19 BRYAN OUT OF TOWN Lesser known estimands: ATM and ATO Guest Lecture by Laurie Samuels Li, L., Greene, T. (2013). A weighting analogue to pair ma
Mar 19 BRYAN OUT OF TOWN Lesser known estimands: ATM and ATO Guest Lecture by Laurie Samuels Li, L., Greene, T. (2013). A weighting analogue to pair ma
Mar 24 ENAR NO CLASS Attend one Causal Inference Session at ENAR. Come prepared on Wednesday to spend 5 minutes talking about the session.
r44 - 20 Feb 2020 - 17:09 by !LaurieSamuels
ClinicAnalyses
2020 February 20
Raymond Zhou, Vanderbilt Eye Institute
Raymond Zhou, Sean Donahue, Vanderbilt Eye Institute
* We using two separate approaches to study patients that are forwarded to Vanderbilt Eye Institute for ophthalmologic evaluation after a failed vision screen
* We using two separate approaches to study patients that are forwarded to Vanderbilt Eye Institute for ophthalmologic evaluation after a failed vision screen
* VICTR voucher/mentor confirmed
r683 - 20 Feb 2020 - 13:17 by !AmyPerkins
BryanShepherd
Main.BryanShepherd Bryan Shepherd, PhD Professor Vice Chair of Faculty Affairs E mail: bryan.shepherd #64;vanderbilt.edu Phone: 615 343 3496 Fax: 615 ...
r83 - 20 Feb 2020 - 12:50 by !BryanShepherd
MsciBiostatIISchedule
19 Light 411CD A17.9, H10 10.5 Binary Logistic Models HW 10 Simple Logistic
20 Light 411CD H10.6 10.10, B6.10.3, H10.11 (Bayes summary), B13.6.2 13.7, blog, blog " Analysis plan for final project Logistic
20 Light 411CD H10.6 10.10, B6.10.3, H10.11 (Bayes summary), B13.6.2 13.7, blog, blog " Analysis plan for final project LogisticBayes
21 Light 411CD H11, H12, NNT, HTE, Risk Difference Binary Logistic Model Case Studies
21 Light 411CD H11, H12, NNT, HTE, Risk Difference Binary Logistic Model Case Studies HW 11
Monday 24 Light 411CD B19, More Analyses of Diagnostic Yield, Simple Decision Analysis, H13.1 13.3, H14.1 and Table 14.1, B4.1.2 Risk Based Diagnosti
r158 - 20 Feb 2020 - 10:06 by !ThomasStewart
MsciBiostatIISyllabus
1 Graphically presenting model
1 Overview of Bayesian logistic model (B6.10.3)
1 Case study 1 (H11)
Analysis of Covariance in Randomized Studies (B13 13.7)
See also blog article 1, blog article 2
Proportional Odds Ordinal Logistic Models (H13.1 13.3)
r24 - 20 Feb 2020 - 07:50 by !FrankHarrell
ChenRueiLiu
Main.ChenRueiLiu ChenRueiLiu
NEW - 19 Feb 2020 - 15:36 by !RegistrationAgent
r364 - 19 Feb 2020 - 15:36 by !AdminUser
WednesdayClinicNotes


2020 February 19
Jonathan Siktberg, Unknown
* Please provide a short description of your project and the questions you’d like to address: Our project is a case series of 653 patients who have been treat
2020 February 12
r698 - 18 Feb 2020 - 06:18 by !KimHart
GenClinicAnalyses
Heidi Silver Medicine/GI
* To determine HRs for % increases and decreases in skeletal muscle mass and density with survival as the outcome
* To determine HRs for % increases and decreases in skeletal muscle mass and density with survival as the outcome. The assumptions involved in this question
Gianna Petrelli Master of Genetic Counseling VUSM
* I would like to address if the demographic variables of age, race, ethnicity, income level, preferred language, and age correlate with acceptance to the Und
* I would like to address if the demographic variables of age, race, ethnicity, income level, preferred language, and age correlate with acceptance to the Und
r600 - 17 Feb 2020 - 13:40 by !KimHart
CourseBios6321Spring2020
2/13/20 Phase I clinical trials
7 2/18/20 Phase II clinical trials
7 2/18/20 Phase II clinical trials Homework 5 due
2/20/20 Phase II clinical trials
r9 - 17 Feb 2020 - 13:20 by !TatsukiKoyama
CourseBios330
R Scripts in Book
NEW Assignments 2020 02 08 Assignment 4
NEW Assignments 2020 02 17 Assignment 5
NEW Solutions 2020 02 11 Assignment 3
NEW Solutions 2020 02 17 Assignment 4
Solution knitr source
r213 - 17 Feb 2020 - 07:39 by !FrankHarrell
CourseDSI5640
Teaching Assistants
* TBD
* Ryan Jarrett
* Nathan James
Dates, Time, and Location
%META:FILEATTACHMENT{name="Intro.pdf" attachment="Intro.pdf" attr="" comment="" date="1578320141" path="Intro.pdf" size="800641" user="MattShotwell" version="1"}
%META:FILEATTACHMENT{name="lecture 1.pdf" attachment="lecture 1.pdf" attr="" comment="" date="1578508926" path="lecture 1.pdf" size="424739" user="MattShotwell"
r3 - 16 Feb 2020 - 21:22 by !MattShotwell
CourseBios362
Wed. 2/12 HTF Ch. 5.1 and 5.2 Wed. 2/12 (below) Basis expansions: piecewise polynomials splines lecture 11.pdf splines example.R
Wed. 2/14 HTF Ch. 5.1 and 5.2 Wed. 2/12 (below) Basis expansions: piecewise polynomials splines (cont.) lecture 11.pdf splines example.R
Mon. 2/17 HTF Ch. 6.1 6.5 none Guest lecture by Nathan James: Kernel methods; Meet at 1:10 2:00PM, ESB/the Wond’ry, 044 lecture 13.pdf mixture data knn
Wed. 2/19 none none Guest lecture by Hannah Weeks: medExtractR; Meet at 1:10 2:00PM, ESB/the Wond’ry, 044
Fri. 2/21 none none Guest lecture by Nick Strayer; Meet at 1:10 2:00PM, ESB/the Wond’ry, 044
Homework/Laboratory (other than problems listed in HTF)
r286 - 16 Feb 2020 - 13:07 by !MattShotwell
ContinuingEdu
* 2020 Spring Semester
* February 21st. Hannah Weeks.
* February 21st. Hannah Weeks. Title: Extracting medication information form clinical notes using medExtractR.
* March 20th. Shilin Zhao.
* March 20th. Shilin Zhao. Title: TBD
%META:FILEATTACHMENT{name="KeepingUpWithGenderSexRaceEthnicity 20190117.pdf" attachment="KeepingUpWithGenderSexRaceEthnicity 20190117.pdf" attr="" comment="Slide
r36 - 13 Feb 2020 - 13:44 by !RunFan
Clinics
Clinic Leaders
* Monday – Kim Hart, Olivia Mason
* Monday – Kim Hart
* Tuesday – Run Fan, Hakmook Kang, Yaomin Xu, Simon Vandekar
r121 - 13 Feb 2020 - 05:38 by !KimHart
MsciBiostatIIAssignments
Main.MsciBiostatIIAssignments GRADES #instructions{ max width: 500px; margin: auto; padding top: .5ex; padding bottom: 1ex; padding left: 1em ...
r50 - 12 Feb 2020 - 16:09 by !ThomasStewart
AmirAsiaee
Walk over to Yaomin Xu in PRB
10:20 10:50am Yaomin Xu, PhDAssistant ProfessorDepartment of Biostatistics PRB
10:20 10:50am Yaomin Xu, PhDAssistant ProfessorDepartment of Biostatistics PRB 584
Walk over to Paul Sternberg at the Eye Institute
r23 - 11 Feb 2020 - 12:01 by !YaominXu
TatsukiRcode
''stripchart'' can produce group by group dot plots, but I don't like the way it jitters the points. (When you specify method='jitter', it jitters all the point


The following function, 'bdp' (box dot plot), can produce a nice dot plot. Dot plots and box plots can be mixed if the sample sizes vastly differ among groups.
boxdotplot
bdp
* vo is a vecotr of the values to be plotted.
r2 - 11 Feb 2020 - 11:32 by !TatsukiKoyama
ChazlieMiller
Main.ChazlieMiller ChazlieMiller
NEW - 11 Feb 2020 - 09:09 by !RegistrationAgent
BiostatItGroup
%META:TOPICPARENT{name="TWikiGroups"}%


Edit this topic to add a description to the BiostatItGroup


%META:PREFERENCE{name="GROUP" title="GROUP" type="Set" value="DalePlummer, ColeBeck, CharlesDupont, JeremyStephens, ZhouwenLiu, WillGray, ShawnGarbett"}%
* Set GROUP = DalePlummer, ColeBeck, CharlesDupont, JeremyStephens, ZhouwenLiu, WillGray
r5 - 10 Feb 2020 - 17:13 by !DalePlummer
AdminGroup
Edit this topic to add a description to the AdminGroup
%META:PREFERENCE{name="GROUP" title="GROUP" type="Set" value="JeremyStephens, FrankHarrell, JeffreyHorner, ColeBeck, CharlesDupont, DalePlummer"}%
%META:PREFERENCE{name="GROUP" title="GROUP" type="Set" value="JeremyStephens, FrankHarrell, ColeBeck, CharlesDupont, DalePlummer"}%
%META:PREFERENCE{name="ALLOWTOPICCHANGE" title="ALLOWTOPICCHANGE" type="Set" value="AdminGroup"}%
r13 - 10 Feb 2020 - 17:12 by !DalePlummer
FanLi12Feb2020Itinerary
Dinner
Attendees: 1. Laurie Samuels 2. Leena Choi 3.
Attendees: 1. Laurie Samuels 2. Leena Choi 3. Amber Hackstadt
Location:
r14 - 10 Feb 2020 - 15:50 by !AmberHackstadt
WednesdaySeminarSeries
March 4 NO SEMINAR SPRING BREAK
March 11
March 11 Stefan Conrady
March 18
March 18 Elizabeth Sigworth
March 25 NO SEMINAR ENAR
r580 - 10 Feb 2020 - 12:19 by !AndrewSpieker
CourseBios6311
BIOS 6311: Principles of Modern Biostatistics
ALERT! Space is limited and enrollment requires special permission. Priority is given to graduate students from the Biostatistics, Epidemiology, and Biomedical Info
ALERT! Space is limited and enrollment requires special permission. Priority is given to graduate students from the Biostatistics, Epidemiology, and Biomedical Info
Course Information
r165 - 09 Feb 2020 - 12:22 by !RobertGreevy
RMSShortCourse2020
Main.RMSShortCourse2020 Regression Modeling Strategies Short Course 2020 About the Course Four Session Short Course for Regression Modeling Strategies by Frank ...
NEW - 09 Feb 2020 - 11:25 by !FrankHarrell
RmS
#ShortCourse
* Vanderbilt University Campus: 13 17 May 2019; details here
* Vanderbilt University Campus: 11 15 May 2020; details here (information will be placed here in Feb. 2020)
* Click here for a detailed course description
* Click here for a description of the pre seminar workshop on R and RStudio
* Contact Frank Harrell for information about the course
r228 - 09 Feb 2020 - 11:01 by !FrankHarrell
FHTools
* Often I'll update an attachment without sending a follow up email
* If you don't want to set this up use Firefox Send and its command line interface ffsend which has an option to automatically place the generated URL into
* R code editor: RStudio
r17 - 09 Feb 2020 - 10:29 by !FrankHarrell
CourseBios330Syllabus
1 Describing the fitted model
1 Bootstrap
1 Bootstrap; see also Section 8.6 of BBR
1 Model validation
1 Model validation; see also this and this
1 Bootstrapping ranks of predictors (L10)
r56 - 04 Feb 2020 - 15:23 by !FrankHarrell
CourseBios330Schedule
19 March 17 3:30 5:00
20 March 19 3:30 5:00
20 March 19 3:30 5:30
21 March 24 3:30 5:00 ENAR need to reschedule class
21 March 24 3:30 5:00 no class ENAR
22 March 26 3:30 5:00
r33 - 04 Feb 2020 - 15:21 by !FrankHarrell
RMSShortCourse2019
*Registration is now OPEN. The last day to register will be Monday, May 5, 2019.
* Please email interest to Jill Shell ( jillanne.k.shell #64;vumc.org)
* Please email interest to Frank Harrell ( f.harrell #64;vumc.org)
* Course Fees
r6 - 04 Feb 2020 - 12:24 by !FrankHarrell
ThomasLumley05Feb2020Itinerary
Dinner Tuesday night:
Thomas Lumley, Pam Shaw, Ran Tao, Frank Harrell, Jonathan Schildcrout
Thomas Lumley, Pam Shaw, Ran Tao, Frank Harrell, Jonathan SchildcroutJ Alexanders Redland Grill 6:00pm2609 West End Ave
Wednesday, 5 February 2020
r6 - 03 Feb 2020 - 18:49 by !FrankHarrell
MsciBiostatII
}
MSCI Biostatistics II February 2019
MSCI Biostatistics II February 2020
Key Persons Name Contact Office Hours
Key Persons Name Contact Slack
Instructors: Frank E. Harrell, Jr. f.harrell #64;vumc.org By appointment
r89 - 31 Jan 2020 - 19:59 by !ThomasStewart
BasicSciClinicAnalyses

2020 Jan 31
Consultant: Dan Ayers
Lucy Li, Dianna Rowe, Ed Levine
* Compare 5 mRNA between 4 (including control) genotypes.
* Recommendations: Analyzed data on single delta Ct values. Blocking on different analysis times. Looking at a reference control along with wildtype, then tr
r191 - 31 Jan 2020 - 13:05 by !DanAyers
CqiProjects
* Team members: Ahra Kim
1 Improve retention in our department, understand reasons for turnover. Conduct exit interview in REDCap. In general at Vanderbilt pay isn’t the primary reas
* Project Leader
Add new projects above this line
r199 - 29 Jan 2020 - 12:05 by !DanielByrne
TatsukiKoyama
%META:TOPICPARENT{name="TWikiUsers"}%

STYLESHEET{http://biostat.mc.vanderbilt.edu/wiki/pub/Main/WebHome/../TatsukiRcode/koyama.css}
Tatsuki Koyama, PhD
* Name: Tatsuki Koyama
Associate Professor of BiostatisticsCenter for Quantitative Sciences and Department of BiostatisticsVanderbilt University Medical CenterVanderbilt University Sch
NEW - 28 Jan 2020 - 20:53 by !TatsukiKoyama
FacultyStaff
Josh DeClercq , M.S. Biostatistician II June 2018 Vanderbilt University
Zhihong Yu , M.S. PhD Biostatistician II Jan 2020 Indiana University Purdue University Indianapolis
Research Analysts and Research Nurses
r123 - 28 Jan 2020 - 15:59 by !ZhihongYu
ZhihongYu
Main.ZhihongYu ZhihongYu
NEW - 28 Jan 2020 - 15:52 by !RegistrationAgent
AnalysisOfObserverVariability
Analysis Of Observer Variability

See https://github.com/harrelfe/rscripts files named observerVariability*
Main program
To load the function definitions into an RStudio session, run

NEW - 27 Jan 2020 - 17:42 by !FrankHarrell
TianjianZhouVisit
Time Person/Event Location
8:55am Tawanna will meet Tianjian at the Marriott lobby and bring him to Chang's office
9:00 9:30am Chang Yu, PhDAssociate ProfessorDepartment of Biostatistics WEA 11136
r27 - 21 Jan 2020 - 15:18 by !JonathanSchildcrout
JunParkVisit
9:00 9:30am Chang Yu, PhDAssociate ProfessorDepartment of Biostatistics WEA 11136
9:30 10:00am
9:30 10:00am Andrew Spieker, PhDAssistant ProfessorDepartment of Biostatistics
10:00 10:30am Amber Hackstadt, PhDAssistant ProfessorDepartment of Biostatistics
r26 - 21 Jan 2020 - 11:05 by !JonathanSchildcrout

Topic attachments
I Attachment Action Size Date Who Comment
2018_CQS_SI_Flyer.pdfpdf 2018_CQS_SI_Flyer.pdf manage 214.5 K 19 Apr 2018 - 15:58 DalePlummer  
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